ENCFF853XSN

Library Details

Organism: Homo Sapiens
Biosample: Peyer's patch (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR091JNF
Description: Part of ENCODE experiment ENCSR091JNF. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's ileum tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 3973685.00 85.18 12005.39 95.1 MIR194-2HG-201 lncRNA Peyer's patch (Tissue)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 69.00 100.00 0.21 100.0 RPS7P15-201 processed pseudogene Peyer's patch (Tissue)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 9.00 0.25 0.03 100.0 SNORD62B-201 snoRNA Peyer's patch (Tissue)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 1086.00 29.90 3.28 84.91 SNORD62B-201 snoRNA Peyer's patch (Tissue)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 710.00 19.55 2.15 100.0 SNORD62B-201 snoRNA Peyer's patch (Tissue)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 357.00 9.83 1.08 100.0 SNORD62B-201 snoRNA Peyer's patch (Tissue)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 58.00 87.88 0.18 100.0 MRPL32-203 nonsense mediated decay Peyer's patch (Tissue)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 58.00 61.70 0.18 100.0 ENST00000436739 lncRNA Peyer's patch (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 84.00 3.29 0.25 24.93 TMEM107-204 protein coding Peyer's patch (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 1341.00 52.49 4.05 90.85 TMEM107-204 protein coding Peyer's patch (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 131.00 5.13 0.40 100.0 TMEM107-204 protein coding Peyer's patch (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 1152.00 69.44 3.48 100.0 SNHG16-201 lncRNA Peyer's patch (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 64138.00 79.33 193.78 93.36 SNORD105B-201 snoRNA Peyer's patch (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 452.00 43.80 1.37 68.8 SNORD121B-201 snoRNA Peyer's patch (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 54.00 6.24 0.16 100.0 SNORD127-201 snoRNA Peyer's patch (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 18206.00 96.86 55.00 100.0 SNORD42B-201 snoRNA Peyer's patch (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 100.00 2.56 0.30 100.0 RNY4P25-201 misc RNA Peyer's patch (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 1357.00 85.19 4.10 100.0 SNORD121A-201 snoRNA Peyer's patch (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 3655.00 95.68 11.04 100.0 SNORD126-201 snoRNA Peyer's patch (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 1101.00 40.98 3.33 100.0 SNHG12-201 retained intron Peyer's patch (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 7015.00 97.92 21.19 100.0 SMC1A-204 retained intron Peyer's patch (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 201.00 16.18 0.61 100.0 DDX39B-219 retained intron Peyer's patch (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 454.00 36.55 1.37 100.0 DDX39B-219 retained intron Peyer's patch (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 3182.00 81.01 9.61 100.0 RPS8-206 protein coding CDS not defined Peyer's patch (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 2908.00 43.87 8.79 100.0 RPL13-207 retained intron Peyer's patch (Tissue)