ENCFF834CUR

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000823279.1 ENST00000823279.1_78_169_+ 78–169 1054.00 23.13 13.90 99.15 ENST00000823279 lncRNA HT-29 (Cell line)
ENST00000823279.1 ENST00000823279.1_107_169_+ 107–169 244.41 5.36 3.22 39.68 ENST00000823279 lncRNA HT-29 (Cell line)
ENST00000823279.1 ENST00000823279.1_105_169_+ 105–169 408.53 8.96 5.39 53.47 ENST00000823279 lncRNA HT-29 (Cell line)
ENST00000823279.1 ENST00000823279.1_151_169_+ 151–169 241.66 5.30 3.19 55.17 ENST00000823279 lncRNA HT-29 (Cell line)
ENST00000823801.1 ENST00000823801.1_153_169_+ 153–169 378.42 8.30 4.99 81.56 ENST00000823801 lncRNA HT-29 (Cell line)
ENST00000828033.1 ENST00000828033.1_252_322_+ 252–322 5349.00 25.98 70.55 100.0 GAS5-377 lncRNA HT-29 (Cell line)
ENST00000828033.1 ENST00000828033.1_278_318_+ 278–318 10.00 0.05 0.13 100.0 GAS5-377 lncRNA HT-29 (Cell line)
ENST00000828033.1 ENST00000828033.1_290_318_+ 290–318 37.00 0.18 0.49 100.0 GAS5-377 lncRNA HT-29 (Cell line)
ENST00000828033.1 ENST00000828033.1_252_318_+ 252–318 14934.00 72.52 196.96 100.0 GAS5-377 lncRNA HT-29 (Cell line)
ENST00000830954.1 ENST00000830954.1_968_989_+ 968–989 7.00 100.00 0.09 100.0 MIR205HG-245 lncRNA HT-29 (Cell line)
ENST00000833535.1 ENST00000833535.1_763_828_+ 763–828 23.00 8.30 0.30 100.0 TAF12-DT-204 lncRNA HT-29 (Cell line)
ENST00000836993.1 ENST00000836993.1_387_463_+ 387–463 180094.00 95.15 2375.20 99.81 ZFAS1-238 lncRNA HT-29 (Cell line)
ENST00000836993.1 ENST00000836993.1_402_463_+ 402–463 211.00 0.11 2.78 100.0 ZFAS1-238 lncRNA HT-29 (Cell line)
ENST00000836993.1 ENST00000836993.1_410_463_+ 410–463 394.00 0.21 5.20 100.0 ZFAS1-238 lncRNA HT-29 (Cell line)
ENST00000836993.1 ENST00000836993.1_422_463_+ 422–463 113.00 0.06 1.49 100.0 ZFAS1-238 lncRNA HT-29 (Cell line)
ENST00000836997.1 ENST00000836997.1_305_380_+ 305–380 38235.00 96.96 504.27 100.0 ZFAS1-242 lncRNA HT-29 (Cell line)
ENST00000836997.1 ENST00000836997.1_305_352_+ 305–352 406.00 1.03 5.35 100.0 ZFAS1-242 lncRNA HT-29 (Cell line)
ENST00000837997.1 ENST00000837997.1_211_224_+ 211–224 10.00 14.49 0.13 100.0 ENST00000837997 lncRNA HT-29 (Cell line)
ENST00000837997.1 ENST00000837997.1_214_225_+ 214–225 10.00 14.49 0.13 100.0 ENST00000837997 lncRNA HT-29 (Cell line)
ENST00000839036.1 ENST00000839036.1_40_61_+ 40–61 46.00 57.50 0.61 66.67 ENST00000839036 lncRNA HT-29 (Cell line)
ENST00000849527.1 ENST00000849527.1_293_307_+ 293–307 13.00 13.00 0.17 100.0 ENST00000849527 lncRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_2_52_+ 2–52 733.00 40.19 9.67 100.0 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_3_32_+ 3–32 263.00 14.42 3.47 98.13 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-121020729 tRNA-transcript-chr1-121020729_1_54_+ 1–54 87.00 0.76 1.15 100.0 TRNA-TRANSCRIPT-CHR1-121020729 Val tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_23_+ 1–23 102.00 66.67 1.35 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA HT-29 (Cell line)