ENCFF834CUR

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000732834.1 ENST00000732834.1_2132_2152_+ 2132–2152 229.00 48.31 3.02 100.0 MIR200CHG-202 lncRNA HT-29 (Cell line)
ENST00000732834.1 ENST00000732834.1_1719_1741_+ 1719–1741 121.00 25.53 1.60 100.0 MIR200CHG-202 lncRNA HT-29 (Cell line)
ENST00000738116.1 ENST00000738116.1_64_97_+ 64–97 11.00 3.51 0.15 100.0 SNHG16-266 lncRNA HT-29 (Cell line)
ENST00000738116.1 ENST00000738116.1_88_138_+ 88–138 5.00 1.60 0.07 100.0 SNHG16-266 lncRNA HT-29 (Cell line)
ENST00000738116.1 ENST00000738116.1_64_138_+ 64–138 33.00 10.54 0.44 100.0 SNHG16-266 lncRNA HT-29 (Cell line)
ENST00000738116.1 ENST00000738116.1_111_138_+ 111–138 10.00 3.19 0.13 100.0 SNHG16-266 lncRNA HT-29 (Cell line)
ENST00000743202.1 ENST00000743202.1_560_577_+ 560–577 33.00 37.08 0.44 100.0 NR2F2-AS1-327 lncRNA HT-29 (Cell line)
ENST00000747675.1 ENST00000747675.1_804_853_+ 804–853 31.00 4.23 0.41 43.06 ENST00000747675 lncRNA HT-29 (Cell line)
ENST00000747675.1 ENST00000747675.1_802_853_+ 802–853 41.00 5.59 0.54 37.96 ENST00000747675 lncRNA HT-29 (Cell line)
ENST00000747675.1 ENST00000747675.1_817_853_+ 817–853 180.00 24.56 2.37 100.0 ENST00000747675 lncRNA HT-29 (Cell line)
ENST00000747675.1 ENST00000747675.1_800_853_+ 800–853 36.00 4.91 0.47 46.75 ENST00000747675 lncRNA HT-29 (Cell line)
ENST00000747675.1 ENST00000747675.1_812_853_+ 812–853 130.00 17.74 1.71 100.0 ENST00000747675 lncRNA HT-29 (Cell line)
ENST00000748458.1 ENST00000748458.1_161_230_+ 161–230 12.00 20.69 0.16 57.14 SNHG26-250 lncRNA HT-29 (Cell line)
ENST00000748458.1 ENST00000748458.1_161_188_+ 161–188 9.00 15.52 0.12 69.23 SNHG26-250 lncRNA HT-29 (Cell line)
ENST00000752259.1 ENST00000752259.1_405_425_+ 405–425 10.00 8.00 0.13 100.0 LINC02422-207 lncRNA HT-29 (Cell line)
ENST00000753088.1 ENST00000753088.1_508_523_+ 508–523 15.00 6.17 0.20 100.0 ENST00000753088 lncRNA HT-29 (Cell line)
ENST00000753088.1 ENST00000753088.1_508_542_+ 508–542 6.00 2.47 0.08 100.0 ENST00000753088 lncRNA HT-29 (Cell line)
ENST00000756336.1 ENST00000756336.1_98_172_+ 98–172 94.00 6.68 1.24 100.0 ENST00000756336 lncRNA HT-29 (Cell line)
ENST00000756336.1 ENST00000756336.1_98_127_+ 98–127 204.16 14.50 2.69 73.44 ENST00000756336 lncRNA HT-29 (Cell line)
ENST00000756336.1 ENST00000756336.1_133_172_+ 133–172 45.00 3.20 0.59 100.0 ENST00000756336 lncRNA HT-29 (Cell line)
ENST00000756336.1 ENST00000756336.1_117_172_+ 117–172 44.00 3.12 0.58 100.0 ENST00000756336 lncRNA HT-29 (Cell line)
ENST00000756336.1 ENST00000756336.1_137_172_+ 137–172 10.00 0.71 0.13 100.0 ENST00000756336 lncRNA HT-29 (Cell line)
ENST00000756336.1 ENST00000756336.1_98_132_+ 98–132 78.58 5.58 1.04 23.53 ENST00000756336 lncRNA HT-29 (Cell line)
ENST00000756336.1 ENST00000756336.1_98_130_+ 98–130 284.78 20.23 3.76 84.25 ENST00000756336 lncRNA HT-29 (Cell line)
ENST00000756336.1 ENST00000756336.1_107_172_+ 107–172 21.74 1.54 0.29 25.88 ENST00000756336 lncRNA HT-29 (Cell line)