ENCFF834CUR

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000617785.1 ENST00000617785.1_22_116_+ 22–116 3463.00 3.62 45.67 100.0 U2.3-201 snRNA HT-29 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 3987.19 4.17 52.59 45.48 U2.3-201 snRNA HT-29 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 5916.07 6.19 78.03 55.93 U2.3-201 snRNA HT-29 (Cell line)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 112.00 0.12 1.48 100.0 U2.6-201 snRNA HT-29 (Cell line)
ENST00000619323.3 ENST00000619323.3_499_516_+ 499–516 12.00 0.67 0.16 42.86 ENST00000619323 lncRNA HT-29 (Cell line)
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 1735.00 97.53 22.88 98.86 ENST00000619323 lncRNA HT-29 (Cell line)
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 10.00 4.48 0.13 100.0 SCARNA4-202 scaRNA HT-29 (Cell line)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 163.00 62.69 2.15 100.0 ENST00000625572 miRNA HT-29 (Cell line)
ENST00000628177.1 ENST00000628177.1_1_79_+ 1–79 1098.00 86.73 14.48 100.0 ENST00000628177 snoRNA HT-29 (Cell line)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 7365.00 95.61 97.13 100.0 ENST00000630615 snoRNA HT-29 (Cell line)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 23.00 53.49 0.30 100.0 DMRT2-209 protein coding HT-29 (Cell line)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 9.00 6.16 0.12 100.0 SNORD98-201 snoRNA HT-29 (Cell line)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 78.00 53.42 1.03 100.0 SNORD98-201 snoRNA HT-29 (Cell line)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 1520.34 30.75 20.05 32.9 MIR106AHG-201 lncRNA HT-29 (Cell line)
ENST00000636668.1 ENST00000636668.1_2902_2924_+ 2902–2924 4.00 0.08 0.05 100.0 MIR106AHG-201 lncRNA HT-29 (Cell line)
ENST00000640631.2 ENST00000640631.2_5267_5357_+ 5267–5357 2.00 50.00 0.03 100.0 SNHG14-224 lncRNA HT-29 (Cell line)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 807.16 26.27 10.65 70.13 5S_rRNA.20-201 rRNA pseudogene HT-29 (Cell line)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 547.00 29.66 7.21 100.0 HSPA9-211 retained intron HT-29 (Cell line)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 687.00 37.26 9.06 86.2 HSPA9-211 retained intron HT-29 (Cell line)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 1.00 100.00 0.01 100.0 DNM3OS-205 lncRNA HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 62.00 0.02 0.82 100.0 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 15.00 0.01 0.20 100.0 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 923.00 0.31 12.17 100.0 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 188.00 0.06 2.48 40.26 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 2729.00 0.91 35.99 99.49 GAS5-230 retained intron HT-29 (Cell line)