ENCFF834CUR

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 2021.00 79.66 26.65 88.45 SNORD91A-201 snoRNA HT-29 (Cell line)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 8.00 40.00 0.11 100.0 MIR486-1-201 miRNA HT-29 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 2795.00 15.17 36.86 34.24 NOP56-219 retained intron HT-29 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 299.00 1.62 3.94 100.0 NOP56-219 retained intron HT-29 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 90.00 0.49 1.19 100.0 NOP56-219 retained intron HT-29 (Cell line)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 7523.00 40.83 99.22 98.51 NOP56-219 retained intron HT-29 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_83_+ 1–83 2351.00 11.16 31.01 72.18 RNA5-8SN2-201 rRNA HT-29 (Cell line)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 50.07 0.24 0.66 61.82 RNA5-8SN2-201 rRNA HT-29 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 93.00 0.44 1.23 100.0 RNA5-8SN2-201 rRNA HT-29 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 64.00 0.30 0.84 100.0 RNA5-8SN2-201 rRNA HT-29 (Cell line)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 65.00 0.31 0.86 100.0 RNA5-8SN2-201 rRNA HT-29 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_81_+ 1–81 1247.00 5.92 16.45 34.66 RNA5-8SN2-201 rRNA HT-29 (Cell line)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 30.06 0.14 0.40 37.11 RNA5-8SN2-201 rRNA HT-29 (Cell line)
ENST00000615835.1 ENST00000615835.1_56_79_+ 56–79 61.00 98.39 0.80 100.0 MIR7974-201 miRNA HT-29 (Cell line)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 280.00 0.29 3.69 100.0 U2.3-201 snRNA HT-29 (Cell line)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 690.20 0.72 9.10 36.35 U2.3-201 snRNA HT-29 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 54842.00 57.38 723.29 96.77 U2.3-201 snRNA HT-29 (Cell line)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 12.00 0.01 0.16 100.0 U2.3-201 snRNA HT-29 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 4720.00 4.94 62.25 79.66 U2.3-201 snRNA HT-29 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 1198.00 1.25 15.80 52.52 U2.3-201 snRNA HT-29 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_70_+ 1–70 7071.00 7.40 93.26 96.27 U2.3-201 snRNA HT-29 (Cell line)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 1333.69 1.40 17.59 70.23 U2.3-201 snRNA HT-29 (Cell line)
ENST00000617785.1 ENST00000617785.1_170_188_+ 170–188 18.00 0.02 0.24 100.0 U2.3-201 snRNA HT-29 (Cell line)
ENST00000617785.1 ENST00000617785.1_93_116_+ 93–116 1.00 0.00 0.01 100.0 U2.3-201 snRNA HT-29 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_75_+ 1–75 24.00 0.03 0.32 100.0 U2.3-201 snRNA HT-29 (Cell line)