ENCFF834CUR

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362162.1 ENST00000362162.1_14_35_+ 14–35 30.00 37.04 0.40 100.0 MIR425-201 miRNA HT-29 (Cell line)
ENST00000362168.1 ENST00000362168.1_66_87_+ 66–87 9.00 50.00 0.12 100.0 MIR210-201 miRNA HT-29 (Cell line)
ENST00000362177.3 ENST00000362177.3_43_64_+ 43–64 570.00 96.77 7.52 98.79 MIR378A-201 miRNA HT-29 (Cell line)
ENST00000362181.3 ENST00000362181.3_6_27_+ 6–27 38.00 67.86 0.50 100.0 MIR361-201 miRNA HT-29 (Cell line)
ENST00000362195.3 ENST00000362195.3_48_66_+ 48–66 2.00 1.87 0.03 20.0 MIR101-2-201 miRNA HT-29 (Cell line)
ENST00000362195.3 ENST00000362195.3_49_70_+ 49–70 95.00 88.79 1.25 92.23 MIR101-2-201 miRNA HT-29 (Cell line)
ENST00000362205.1 ENST00000362205.1_10_31_+ 10–31 1634.00 98.67 21.55 99.45 MIR26A1-201 miRNA HT-29 (Cell line)
ENST00000362207.3 ENST00000362207.3_15_35_+ 15–35 1.00 100.00 0.01 100.0 MIR129-2-201 miRNA HT-29 (Cell line)
ENST00000362215.3 ENST00000362215.3_6_27_+ 6–27 1.00 1.82 0.01 100.0 MIR148A-201 miRNA HT-29 (Cell line)
ENST00000362215.3 ENST00000362215.3_44_65_+ 44–65 50.00 90.91 0.66 94.34 MIR148A-201 miRNA HT-29 (Cell line)
ENST00000362251.4 ENST00000362251.4_12_33_+ 12–33 375.00 94.46 4.95 96.65 MIR26B-201 miRNA HT-29 (Cell line)
ENST00000362252.3 ENST00000362252.3_63_86_+ 63–86 94.00 68.61 1.24 83.19 MIR148B-201 miRNA HT-29 (Cell line)
ENST00000362280.3 ENST00000362280.3_5_26_+ 5–26 403.00 99.02 5.32 100.0 MIRLET7G-201 miRNA HT-29 (Cell line)
ENST00000362283.1 ENST00000362283.1_6_25_+ 6–25 7.00 0.77 0.09 50.0 MIR30D-201 miRNA HT-29 (Cell line)
ENST00000362283.1 ENST00000362283.1_6_21_+ 6–21 2.00 0.22 0.03 100.0 MIR30D-201 miRNA HT-29 (Cell line)
ENST00000362283.1 ENST00000362283.1_6_29_+ 6–29 876.00 96.37 11.55 99.21 MIR30D-201 miRNA HT-29 (Cell line)
ENST00000362291.1 ENST00000362291.1_15_35_+ 15–35 1.00 100.00 0.01 100.0 MIR126-201 miRNA HT-29 (Cell line)
ENST00000362298.3 ENST00000362298.3_42_63_+ 42–63 10.00 52.63 0.13 100.0 MIR374A-201 miRNA HT-29 (Cell line)
ENST00000362307.1 ENST00000362307.1_8_29_+ 8–29 1240.00 81.79 16.35 100.0 MIR31-201 miRNA HT-29 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_49_+ 1–49 9657.00 10.23 127.36 85.1 RNA5S12-201 rRNA HT-29 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_58_+ 1–58 5407.00 5.73 71.31 100.0 RNA5S12-201 rRNA HT-29 (Cell line)
ENST00000362400.1 ENST00000362400.1_26_95_+ 26–95 21.00 0.02 0.28 16.03 RNA5S12-201 rRNA HT-29 (Cell line)
ENST00000362400.1 ENST00000362400.1_14_32_+ 14–32 39.00 0.04 0.51 100.0 RNA5S12-201 rRNA HT-29 (Cell line)
ENST00000362400.1 ENST00000362400.1_15_95_+ 15–95 120.81 0.13 1.59 55.17 RNA5S12-201 rRNA HT-29 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_95_+ 1–95 2871.00 3.04 37.86 99.41 RNA5S12-201 rRNA HT-29 (Cell line)