ENCFF834CUR

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 157.00 12.13 2.07 51.99 TMEM107-204 protein coding HT-29 (Cell line)
ENST00000437139.7 ENST00000437139.7_1225_1267_+ 1225–1267 15.00 1.16 0.20 100.0 TMEM107-204 protein coding HT-29 (Cell line)
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 35.00 2.70 0.46 100.0 TMEM107-204 protein coding HT-29 (Cell line)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 5.00 0.39 0.07 100.0 TMEM107-204 protein coding HT-29 (Cell line)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 22.00 1.70 0.29 55.0 TMEM107-204 protein coding HT-29 (Cell line)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 936.00 32.55 12.34 68.02 SNHG16-201 lncRNA HT-29 (Cell line)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 1523.00 52.96 20.09 100.0 SNHG16-201 lncRNA HT-29 (Cell line)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 28961.00 97.19 381.96 98.67 SNORD105B-201 snoRNA HT-29 (Cell line)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 356.00 79.29 4.70 95.7 SNORD121B-201 snoRNA HT-29 (Cell line)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 9346.00 91.65 123.26 99.68 SNORD127-201 snoRNA HT-29 (Cell line)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 4649.00 89.58 61.31 100.0 SNORD42B-201 snoRNA HT-29 (Cell line)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 11.00 10.48 0.15 100.0 RNY4P25-201 misc RNA HT-29 (Cell line)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 285.00 57.81 3.76 100.0 SNORD121A-201 snoRNA HT-29 (Cell line)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 1316.00 49.34 17.36 81.84 SNORD126-201 snoRNA HT-29 (Cell line)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 1269.00 47.58 16.74 72.76 SNORD126-201 snoRNA HT-29 (Cell line)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 2053.00 87.07 27.08 90.6 SNORD124-201 snoRNA HT-29 (Cell line)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 1.00 0.16 0.01 100.0 SNHG12-201 retained intron HT-29 (Cell line)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 131.00 9.18 1.73 100.0 RPL3-212 retained intron HT-29 (Cell line)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 548.00 38.40 7.23 94.16 RPL3-212 retained intron HT-29 (Cell line)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 1131.00 97.42 14.92 100.0 SMC1A-204 retained intron HT-29 (Cell line)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 34546.00 95.40 455.62 99.36 RABGGTB-208 protein coding CDS not defined HT-29 (Cell line)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 145.00 46.03 1.91 87.88 DDX39B-219 retained intron HT-29 (Cell line)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 16.00 5.08 0.21 100.0 DDX39B-219 retained intron HT-29 (Cell line)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 4.00 1.27 0.05 100.0 DDX39B-219 retained intron HT-29 (Cell line)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 799.00 85.64 10.54 100.0 RPS8-206 protein coding CDS not defined HT-29 (Cell line)