ENCFF811DGS

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR269YSX
Description: Part of ENCODE experiment ENCSR269YSX. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 58.00 0.79 0.25 100.0 MIR222HG-206 lncRNA gastroesophageal sphincter (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 320.00 68.23 1.36 100.0 RPSA-216 retained intron gastroesophageal sphincter (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 711.00 2.07 3.03 70.82 MIR99AHG-370 lncRNA gastroesophageal sphincter (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 32475.00 94.35 138.29 98.32 MIR99AHG-370 lncRNA gastroesophageal sphincter (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 115.00 83.94 0.49 100.0 HPS4-237 retained intron gastroesophageal sphincter (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 18.00 75.00 0.08 100.0 MEG8-253 lncRNA gastroesophageal sphincter (Tissue)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 5.00 1.28 0.02 100.0 MEG9-206 lncRNA gastroesophageal sphincter (Tissue)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 121.00 30.87 0.52 100.0 MEG9-206 lncRNA gastroesophageal sphincter (Tissue)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 2811.00 13.60 11.97 100.0 DNAJC5-203 nonsense mediated decay gastroesophageal sphincter (Tissue)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 358.00 11.31 1.52 100.0 ENST00000707189 TEC gastroesophageal sphincter (Tissue)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 288.00 0.29 1.23 100.0 MIR17HG-214 lncRNA gastroesophageal sphincter (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 37118.64 37.48 158.06 40.08 MIR17HG-214 lncRNA gastroesophageal sphincter (Tissue)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 1.00 0.00 0.00 100.0 MIR17HG-214 lncRNA gastroesophageal sphincter (Tissue)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 3.00 0.00 0.01 100.0 MIR17HG-214 lncRNA gastroesophageal sphincter (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 60720.79 61.31 258.57 62.84 MIR17HG-214 lncRNA gastroesophageal sphincter (Tissue)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 42.00 0.04 0.18 100.0 MIR17HG-214 lncRNA gastroesophageal sphincter (Tissue)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 128.00 0.13 0.55 100.0 MIR17HG-214 lncRNA gastroesophageal sphincter (Tissue)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 53.00 0.05 0.23 100.0 MIR17HG-214 lncRNA gastroesophageal sphincter (Tissue)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 95.00 0.10 0.40 100.0 MIR17HG-214 lncRNA gastroesophageal sphincter (Tissue)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 6841.00 4.94 29.13 100.0 SNHG32-223 lncRNA gastroesophageal sphincter (Tissue)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 286.00 0.21 1.22 100.0 SNHG32-223 lncRNA gastroesophageal sphincter (Tissue)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 47.00 0.03 0.20 100.0 SNHG32-223 lncRNA gastroesophageal sphincter (Tissue)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 1428.00 1.03 6.08 68.03 SNHG32-223 lncRNA gastroesophageal sphincter (Tissue)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 127803.00 92.36 544.22 100.0 SNHG32-223 lncRNA gastroesophageal sphincter (Tissue)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 29865.00 95.28 127.17 98.91 SNHG32-227 lncRNA gastroesophageal sphincter (Tissue)