ENCFF797VVQ

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR233DGJ
Description: Part of ENCODE experiment ENCSR233DGJ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_34_+ 1–34 45.00 0.09 0.30 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_49_+ 1–49 190.00 0.39 1.27 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_34_53_+ 34–53 26.00 0.05 0.17 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_1_52_+ 1–52 4474.00 7.11 29.81 93.19 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_13_32_+ 13–32 157.00 0.25 1.05 58.8 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_10_32_+ 10–32 171.00 0.27 1.14 77.03 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR17-8222238 tRNA-transcript-chr17-8222238_1_33_+ 1–33 248.00 21.93 1.65 79.74 TRNA-TRANSCRIPT-CHR17-8222238 Asp tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR1-7930279 tRNA-transcript-chr1-7930279_1_33_+ 1–33 265.00 84.94 1.77 100.0 TRNA-TRANSCRIPT-CHR1-7930279 Pseudo tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR19-45478602 tRNA-transcript-chr19-45478602_1_37_+ 1–37 13.00 3.33 0.09 65.0 TRNA-TRANSCRIPT-CHR19-45478602 SeC(e) tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR20-45322361 tRNA-transcript-chr20-45322361_1_33_+ 1–33 16.00 100.00 0.11 100.0 TRNA-TRANSCRIPT-CHR20-45322361 Pseudo tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_52_+ 1–52 8.00 0.13 0.05 2.42 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_3_52_+ 3–52 323.00 5.26 2.15 97.58 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_32_+ 1–32 969.00 15.78 6.46 76.48 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_33_+ 1–33 283.54 10.35 1.89 56.48 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_28_+ 1–28 213.00 7.78 1.42 82.24 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_35_+ 1–35 218.97 7.99 1.46 45.91 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR2-203364408 tRNA-transcript-chr2-203364408_2_32_+ 2–32 11517.00 86.57 76.75 96.18 TRNA-TRANSCRIPT-CHR2-203364408 Pseudo tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR3-104160680 tRNA-transcript-chr3-104160680_12_33_+ 12–33 60.00 1.08 0.40 100.0 TRNA-TRANSCRIPT-CHR3-104160680 Pseudo tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR5-181188854 tRNA-transcript-chr5-181188854_1_32_+ 1–32 897.00 15.55 5.98 66.25 TRNA-TRANSCRIPT-CHR5-181188854 Pro tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR5-181218270 tRNA-transcript-chr5-181218270_1_39_+ 1–39 135.00 0.38 0.90 100.0 TRNA-TRANSCRIPT-CHR5-181218270 Val tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR6-125780247 tRNA-transcript-chr6-125780247_1_42_+ 1–42 771.00 1.20 5.14 80.73 TRNA-TRANSCRIPT-CHR6-125780247 Glu tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR6-144216547 tRNA-transcript-chr6-144216547_1_50_+ 1–50 107.00 19.07 0.71 100.0 TRNA-TRANSCRIPT-CHR6-144216547 Leu tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR6-26311196 tRNA-transcript-chr6-26311196_1_53_+ 1–53 84.00 1.03 0.56 100.0 TRNA-TRANSCRIPT-CHR6-26311196 Gln tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR6-26538054 tRNA-transcript-chr6-26538054_1_33_+ 1–33 34653.00 94.30 230.92 99.81 TRNA-TRANSCRIPT-CHR6-26538054 Val tRNA esophagus muscularis mucosa (Tissue)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_13_33_+ 13–33 4.00 0.06 0.03 100.0 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA esophagus muscularis mucosa (Tissue)