ENCFF797VVQ

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR233DGJ
Description: Part of ENCODE experiment ENCSR233DGJ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 21.00 0.01 0.14 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 23.00 0.01 0.15 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 5107.00 1.25 34.03 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 1454.00 0.36 9.69 77.09 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 478.69 0.12 3.19 32.68 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 516.00 0.13 3.44 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 1925.00 0.47 12.83 63.22 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 734.00 0.18 4.89 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 31.00 0.01 0.21 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 8.00 0.00 0.05 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 8601.00 18.06 57.32 100.0 SNHG14-315 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 25635.00 53.84 170.83 95.23 SNHG14-315 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 7424.00 15.59 49.47 89.33 SNHG14-315 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 3349.00 0.32 22.32 100.0 SNHG5-273 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 725507.35 68.68 4834.63 73.35 SNHG5-273 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 275.00 0.03 1.83 100.0 SNHG5-273 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 60.00 0.01 0.40 100.0 SNHG5-273 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 270923.94 25.65 1805.38 26.58 SNHG5-273 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 3824.00 0.36 25.48 92.82 SNHG5-273 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 224.00 0.02 1.49 100.0 SNHG5-273 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 1854.00 0.18 12.35 100.0 SNHG5-273 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 203.00 0.02 1.35 100.0 SNHG5-273 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 15822.00 1.50 105.43 98.08 SNHG5-273 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000669673.1 ENST00000669673.1_3794_3884_+ 3794–3884 98.00 8.57 0.65 65.33 SNHG14-323 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 681.00 1.03 4.54 55.55 MEG8-251 lncRNA esophagus muscularis mucosa (Tissue)