ENCFF797VVQ

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR233DGJ
Description: Part of ENCODE experiment ENCSR233DGJ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000667788.1 ENST00000667788.1_3_90_+ 3–90 301.20 12.45 2.01 27.81 SNHG14-312 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000667788.1 ENST00000667788.1_2_92_+ 2–92 765.58 31.64 5.10 70.69 SNHG14-312 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000667814.1 ENST00000667814.1_36_68_+ 36–68 122.00 0.46 0.81 100.0 MEG8-244 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000667814.1 ENST00000667814.1_2_32_+ 2–32 181.00 0.68 1.21 100.0 MEG8-244 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000667814.1 ENST00000667814.1_2_68_+ 2–68 25873.00 97.58 172.41 99.86 MEG8-244 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_295_321_+ 295–321 513.00 0.13 3.42 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_2195_2223_+ 2195–2223 4819.00 1.18 32.11 98.21 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_523_581_+ 523–581 998.30 0.25 6.65 68.14 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_1946_1982_+ 1946–1982 1943.00 0.48 12.95 71.78 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1982_+ 1921–1982 140141.00 34.42 933.87 99.65 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_2522_2560_+ 2522–2560 881.00 0.22 5.87 77.83 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2223_+ 2157–2223 28156.00 6.92 187.63 98.94 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_2532_2560_+ 2532–2560 7233.00 1.78 48.20 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 59190.00 14.54 394.43 99.94 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 125.00 0.03 0.83 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 61.00 0.01 0.41 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 450.00 0.11 3.00 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_1194_1268_+ 1194–1268 18.00 0.00 0.12 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 204.00 0.05 1.36 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 248.00 0.06 1.65 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 4870.00 1.20 32.45 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 108.00 0.03 0.72 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 909.00 0.22 6.06 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 36034.00 8.85 240.12 80.8 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 70496.00 17.32 469.77 99.31 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)