ENCFF797VVQ

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR233DGJ
Description: Part of ENCODE experiment ENCSR233DGJ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 389.00 4.67 2.59 67.53 RPL3-212 retained intron esophagus muscularis mucosa (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 3241.00 95.58 21.60 100.0 SMC1A-204 retained intron esophagus muscularis mucosa (Tissue)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 55290.00 93.18 368.44 99.36 RABGGTB-208 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 448.00 15.54 2.99 100.0 DDX39B-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 1322.00 45.87 8.81 77.54 DDX39B-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 133.00 4.61 0.89 100.0 DDX39B-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 430.00 65.35 2.87 100.0 RPS8-206 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 119225.00 95.43 794.49 99.65 RPL13-207 retained intron esophagus muscularis mucosa (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 2419.00 1.94 16.12 100.0 RPL13-207 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_343_376_+ 343–376 818.00 0.60 5.45 100.0 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 1337.00 0.98 8.91 100.0 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 274.00 0.20 1.83 26.81 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 2618.00 1.92 17.45 86.29 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 15867.00 11.65 105.73 84.76 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 229.00 0.17 1.53 100.0 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 94610.00 69.47 630.46 98.99 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 1300.00 0.95 8.66 51.83 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 163.00 0.12 1.09 36.06 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 26.00 0.02 0.17 100.0 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 1.00 0.00 0.01 100.0 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 6388.00 4.69 42.57 59.01 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 1637.00 1.20 10.91 70.9 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 1072.00 0.79 7.14 48.68 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 96.00 0.07 0.64 48.98 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 6420.00 96.98 42.78 100.0 RPS8-207 protein coding CDS not defined esophagus muscularis mucosa (Tissue)