ENCFF797VVQ

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR233DGJ
Description: Part of ENCODE experiment ENCSR233DGJ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 350.00 45.63 2.33 80.09 RNU1-82P-201 snRNA esophagus muscularis mucosa (Tissue)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 942.00 7.39 6.28 100.0 SNORD66-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 1159.00 9.10 7.72 100.0 SNORD66-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 3559.00 27.93 23.72 76.67 SNORD66-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 137.00 1.08 0.91 100.0 SNORD66-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 80.00 76.19 0.53 100.0 U3.17-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 1103.00 90.04 7.35 100.0 SNORD17-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 160.00 76.56 1.07 100.0 SNORD72-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 452.00 61.58 3.01 100.0 SNORD70B-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 1944.00 42.58 12.95 86.28 RNY4P18-201 misc RNA esophagus muscularis mucosa (Tissue)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 14657.00 85.06 97.67 100.0 SNORD90-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 1185.00 6.88 7.90 57.47 SNORD90-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 2164.00 13.99 14.42 100.0 SNORD69-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 336.00 2.17 2.24 100.0 SNORD69-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 3427.00 22.15 22.84 100.0 SNORD69-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 7907.00 51.10 52.69 100.0 SNORD69-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000391232.1 ENST00000391232.1_9_80_+ 9–80 712.00 49.55 4.74 54.52 SNORD70-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 454.00 0.39 3.03 100.0 B4GALNT2-202 protein coding esophagus muscularis mucosa (Tissue)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 99701.00 85.58 664.39 88.88 B4GALNT2-202 protein coding esophagus muscularis mucosa (Tissue)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 228.00 90.48 1.52 100.0 NDE1-202 protein coding esophagus muscularis mucosa (Tissue)
ENST00000401182.3 ENST00000401182.3_11_31_+ 11–31 14.00 93.33 0.09 100.0 MIR450B-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000401258.3 ENST00000401258.3_48_71_+ 48–71 63.00 31.03 0.42 100.0 MIR887-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000401280.3 ENST00000401280.3_49_69_+ 49–69 18.00 90.00 0.12 100.0 MIR889-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000408139.1 ENST00000408139.1_5_91_+ 5–91 1710.00 64.04 11.40 100.0 SNORD111-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000408314.1 ENST00000408314.1_5_86_+ 5–86 159.00 55.40 1.06 79.9 SNORD88A-201 snoRNA esophagus muscularis mucosa (Tissue)