ENCFF797VVQ

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR233DGJ
Description: Part of ENCODE experiment ENCSR233DGJ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000385199.1 ENST00000385199.1_51_70_+ 51–70 32.00 58.18 0.21 91.43 MIR654-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000385200.3 ENST00000385200.3_33_54_+ 33–54 111.00 98.23 0.74 98.23 MIR204-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000385212.3 ENST00000385212.3_54_76_+ 54–76 1632.00 93.69 10.88 100.0 MIR152-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000385227.1 ENST00000385227.1_17_40_+ 17–40 1372.00 89.21 9.14 100.0 MIR30C1-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000385235.3 ENST00000385235.3_16_37_+ 16–37 33.00 91.67 0.22 100.0 MIR660-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000385236.1 ENST00000385236.1_55_76_+ 55–76 1018.00 11.42 6.78 100.0 MIR125B1-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000385236.1 ENST00000385236.1_15_37_+ 15–37 5908.00 66.28 39.37 87.31 MIR125B1-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000385254.3 ENST00000385254.3_16_37_+ 16–37 1.00 12.50 0.01 100.0 MIR493-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000385254.3 ENST00000385254.3_57_78_+ 57–78 3.00 37.50 0.02 100.0 MIR493-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000385255.3 ENST00000385255.3_23_44_+ 23–44 4232.55 30.97 28.20 34.11 MIR182-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000385255.3 ENST00000385255.3_23_46_+ 23–46 6340.25 46.40 42.25 50.07 MIR182-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000385259.1 ENST00000385259.1_13_34_+ 13–34 36837.00 93.39 245.47 95.25 MIR100-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000385261.1 ENST00000385261.1_51_73_+ 51–73 214.00 98.62 1.43 100.0 MIR301A-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000385274.1 ENST00000385274.1_55_74_+ 55–74 4283.00 94.57 28.54 98.41 MIR130A-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000385274.1 ENST00000385274.1_55_77_+ 55–77 206.00 4.55 1.37 48.13 MIR130A-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000385277.1 ENST00000385277.1_8_29_+ 8–29 271800.00 98.05 1811.22 98.79 MIRLET7F2-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000385278.3 ENST00000385278.3_61_82_+ 61–82 67.00 71.28 0.45 100.0 MIR652-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000385279.1 ENST00000385279.1_16_37_+ 16–37 3.00 75.00 0.02 100.0 MIR653-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000385282.3 ENST00000385282.3_63_84_+ 63–84 1372.00 76.69 9.14 100.0 MIR140-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000385301.1 ENST00000385301.1_12_32_+ 12–32 8.00 2.26 0.05 100.0 MIR106B-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000385301.1 ENST00000385301.1_52_71_+ 52–71 126.00 35.59 0.84 61.76 MIR106B-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 21729.00 46.46 144.80 95.82 SNORD83A-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 22976.00 49.13 153.11 96.18 SNORD83A-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000386967.1 ENST00000386967.1_2_70_+ 2–70 415.00 65.15 2.77 100.0 SNORD41-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000387314.1 ENST00000387314.1_35_54_+ 35–54 102.00 2.49 0.68 62.58 MT-TF-201 Mt tRNA esophagus muscularis mucosa (Tissue)