ENCFF768XBE

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR539RDF
Description: Part of ENCODE experiment ENCSR539RDF. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 4323.00 0.78 31.17 48.07 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_343_376_+ 343–376 3293.00 0.60 23.75 100.0 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 83.00 0.02 0.60 100.0 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 12705.00 2.30 91.61 50.28 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 1122.00 0.20 8.09 66.16 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 252.00 0.05 1.82 38.3 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 10795.00 1.96 77.84 86.85 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 79810.00 14.46 575.50 83.97 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 411647.00 74.60 2968.35 98.87 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 2042.00 0.37 14.72 52.62 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 90.00 9.52 0.65 100.0 RPL7A-206 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 371.00 39.26 2.68 100.0 RPL7A-206 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 201.00 21.27 1.45 100.0 RPL7A-206 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 38516.00 11.07 277.74 97.74 RPL21-209 retained intron upper lobe of left lung (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 8821.00 2.53 63.61 100.0 RPL21-209 retained intron upper lobe of left lung (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 984.00 0.28 7.10 100.0 RPL21-209 retained intron upper lobe of left lung (Tissue)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 295115.00 84.78 2128.05 92.37 RPL21-209 retained intron upper lobe of left lung (Tissue)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 5.00 0.00 0.04 100.0 RPL21-209 retained intron upper lobe of left lung (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 106.00 35.69 0.76 100.0 GABRE-209 retained intron upper lobe of left lung (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 865.00 16.48 6.24 100.0 RPL13A-212 retained intron upper lobe of left lung (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 158.00 3.01 1.14 100.0 RPL13A-212 retained intron upper lobe of left lung (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 204.00 3.89 1.47 100.0 RPL13A-212 retained intron upper lobe of left lung (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 5.00 0.14 0.04 100.0 RPL7A-207 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 529.00 15.26 3.81 100.0 RPL7A-207 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 955.00 27.55 6.89 100.0 RPL7A-207 protein coding CDS not defined upper lobe of left lung (Tissue)