ENCFF768XBE

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR539RDF
Description: Part of ENCODE experiment ENCSR539RDF. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 16.00 0.45 0.12 100.0 SNORD62B-201 snoRNA upper lobe of left lung (Tissue)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 1287.00 36.13 9.28 82.55 SNORD62B-201 snoRNA upper lobe of left lung (Tissue)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 32.00 88.89 0.23 100.0 MRPL32-203 nonsense mediated decay upper lobe of left lung (Tissue)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 6.00 37.50 0.04 100.0 ENST00000436739 lncRNA upper lobe of left lung (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 33.00 1.16 0.24 33.67 TMEM107-204 protein coding upper lobe of left lung (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 1858.00 65.40 13.40 91.89 TMEM107-204 protein coding upper lobe of left lung (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 232.00 8.17 1.67 100.0 TMEM107-204 protein coding upper lobe of left lung (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 862.00 60.32 6.22 100.0 SNHG16-201 lncRNA upper lobe of left lung (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 55004.00 83.33 396.63 95.53 SNORD105B-201 snoRNA upper lobe of left lung (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 534.00 35.02 3.85 59.8 SNORD121B-201 snoRNA upper lobe of left lung (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 13.00 2.13 0.09 100.0 SNORD127-201 snoRNA upper lobe of left lung (Tissue)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 1.00 0.16 0.01 100.0 SNORD127-201 snoRNA upper lobe of left lung (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 18832.00 95.09 135.80 100.0 SNORD42B-201 snoRNA upper lobe of left lung (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 317.00 8.92 2.29 100.0 RNY4P25-201 misc RNA upper lobe of left lung (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 354.00 77.97 2.55 100.0 SNORD121A-201 snoRNA upper lobe of left lung (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 3207.00 95.76 23.13 100.0 SNORD126-201 snoRNA upper lobe of left lung (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 811.00 47.62 5.85 100.0 SNHG12-201 retained intron upper lobe of left lung (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 6084.00 96.48 43.87 100.0 SMC1A-204 retained intron upper lobe of left lung (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 683.00 21.02 4.93 100.0 DDX39B-219 retained intron upper lobe of left lung (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 1506.00 46.34 10.86 100.0 DDX39B-219 retained intron upper lobe of left lung (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 3055.00 88.78 22.03 100.0 RPS8-206 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 366.00 3.85 2.64 100.0 RPL13-207 retained intron upper lobe of left lung (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 5592.00 58.84 40.32 100.0 RPL13-207 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 4323.00 0.78 31.17 48.07 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 104.00 0.02 0.75 24.47 EIF4A2-219 retained intron upper lobe of left lung (Tissue)