ENCFF744HOK

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR998CRC
Description: Part of ENCODE experiment ENCSR998CRC. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_34_+ 1–34 160.00 0.32 0.49 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_49_+ 1–49 1946.00 3.87 5.96 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_34_53_+ 34–53 32.00 0.06 0.10 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_1_52_+ 1–52 16081.00 11.70 49.29 91.14 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_13_32_+ 13–32 65.00 0.05 0.20 37.79 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_10_32_+ 10–32 103.00 0.07 0.32 83.06 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR17-8222238 tRNA-transcript-chr17-8222238_1_33_+ 1–33 882.00 4.99 2.70 77.3 TRNA-TRANSCRIPT-CHR17-8222238 Asp tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-7930279 tRNA-transcript-chr1-7930279_1_33_+ 1–33 1351.00 93.11 4.14 100.0 TRNA-TRANSCRIPT-CHR1-7930279 Pseudo tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR19-45478602 tRNA-transcript-chr19-45478602_1_37_+ 1–37 310.00 19.50 0.95 64.85 TRNA-TRANSCRIPT-CHR19-45478602 SeC(e) tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR20-45322361 tRNA-transcript-chr20-45322361_1_33_+ 1–33 10.00 90.91 0.03 100.0 TRNA-TRANSCRIPT-CHR20-45322361 Pseudo tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_3_52_+ 3–52 1545.00 10.62 4.74 96.56 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_52_+ 1–52 55.00 0.38 0.17 3.44 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_32_+ 1–32 2180.00 14.99 6.68 76.6 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_35_+ 1–35 287.98 5.62 0.88 41.68 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_28_+ 1–28 613.00 11.96 1.88 90.15 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_33_+ 1–33 464.16 9.06 1.42 64.02 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR2-203364408 tRNA-transcript-chr2-203364408_2_32_+ 2–32 21897.00 82.13 67.11 86.79 TRNA-TRANSCRIPT-CHR2-203364408 Pseudo tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR3-104160680 tRNA-transcript-chr3-104160680_12_33_+ 12–33 77.00 0.68 0.24 100.0 TRNA-TRANSCRIPT-CHR3-104160680 Pseudo tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR5-181188854 tRNA-transcript-chr5-181188854_1_32_+ 1–32 1756.00 19.76 5.38 59.36 TRNA-TRANSCRIPT-CHR5-181188854 Pro tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR5-181218270 tRNA-transcript-chr5-181218270_1_39_+ 1–39 270.00 0.55 0.83 100.0 TRNA-TRANSCRIPT-CHR5-181218270 Val tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR6-125780247 tRNA-transcript-chr6-125780247_1_42_+ 1–42 1288.00 0.59 3.95 84.85 TRNA-TRANSCRIPT-CHR6-125780247 Glu tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR6-144216547 tRNA-transcript-chr6-144216547_1_50_+ 1–50 871.00 42.97 2.67 100.0 TRNA-TRANSCRIPT-CHR6-144216547 Leu tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR6-26311196 tRNA-transcript-chr6-26311196_1_53_+ 1–53 235.00 3.80 0.72 100.0 TRNA-TRANSCRIPT-CHR6-26311196 Gln tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR6-26538054 tRNA-transcript-chr6-26538054_1_33_+ 1–33 47204.00 93.98 144.68 99.72 TRNA-TRANSCRIPT-CHR6-26538054 Val tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_1_33_+ 1–33 2495.00 24.12 7.65 72.59 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA gastroesophageal sphincter (Tissue)