ENCFF744HOK

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR998CRC
Description: Part of ENCODE experiment ENCSR998CRC. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 730.00 0.37 2.24 100.0 RBMX-210 retained intron gastroesophageal sphincter (Tissue)
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 608.00 0.30 1.86 100.0 RBMX-210 retained intron gastroesophageal sphincter (Tissue)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 1045.00 0.52 3.20 100.0 RBMX-210 retained intron gastroesophageal sphincter (Tissue)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 119975.00 60.03 367.71 62.0 RBMX-210 retained intron gastroesophageal sphincter (Tissue)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 198.00 11.21 0.61 100.0 RPL4-214 retained intron gastroesophageal sphincter (Tissue)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 1013.00 57.36 3.10 100.0 RPL4-214 retained intron gastroesophageal sphincter (Tissue)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 12310.29 37.58 37.73 71.92 POLG-DT-202 lncRNA gastroesophageal sphincter (Tissue)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 9625.13 29.38 29.50 48.1 POLG-DT-202 lncRNA gastroesophageal sphincter (Tissue)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 742.00 2.26 2.27 100.0 POLG-DT-202 lncRNA gastroesophageal sphincter (Tissue)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 304.00 12.86 0.93 100.0 ENST00000570843 lncRNA gastroesophageal sphincter (Tissue)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 2486.00 79.88 7.62 100.0 MIR497HG-207 lncRNA gastroesophageal sphincter (Tissue)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 23051.00 96.88 70.65 97.52 MIR22HG-212 lncRNA gastroesophageal sphincter (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 300.00 1.65 0.92 36.54 SNORD53B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 521.00 2.86 1.60 63.46 SNORD53B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 16340.00 89.85 50.08 95.34 SNORD53B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 10.00 25.00 0.03 100.0 ENST00000578036 lncRNA gastroesophageal sphincter (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 629.00 85.35 1.93 100.0 RPL23A-207 protein coding gastroesophageal sphincter (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 764.00 91.83 2.34 100.0 MIR744-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 106.00 52.74 0.32 100.0 MIR378C-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 241.00 68.08 0.74 77.24 MIR142HG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 2.00 0.56 0.01 1.69 MIR142HG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 396142.00 80.99 1214.15 90.93 RPL23A-208 retained intron gastroesophageal sphincter (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 408.20 0.08 1.25 54.57 RPL23A-208 retained intron gastroesophageal sphincter (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 323.69 0.07 0.99 59.07 RPL23A-208 retained intron gastroesophageal sphincter (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 89525.00 18.30 274.39 92.45 RPL23A-208 retained intron gastroesophageal sphincter (Tissue)