ENCFF744HOK

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR998CRC
Description: Part of ENCODE experiment ENCSR998CRC. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 4.00 100.00 0.01 100.0 RPS7P15-201 processed pseudogene gastroesophageal sphincter (Tissue)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 4.00 0.08 0.01 100.0 SNORD62B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 914.00 18.49 2.80 92.89 SNORD62B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 488.00 9.87 1.50 100.0 SNORD62B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 576.00 11.66 1.77 100.0 SNORD62B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 967.00 19.57 2.96 100.0 SNORD62B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 24.00 92.31 0.07 100.0 MRPL32-203 nonsense mediated decay gastroesophageal sphincter (Tissue)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 4.00 80.00 0.01 100.0 ENST00000436739 lncRNA gastroesophageal sphincter (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 99.00 1.87 0.30 100.0 TMEM107-204 protein coding gastroesophageal sphincter (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 484.00 9.15 1.48 83.3 TMEM107-204 protein coding gastroesophageal sphincter (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 928.00 17.55 2.84 100.0 TMEM107-204 protein coding gastroesophageal sphincter (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 2264.00 42.81 6.94 90.24 TMEM107-204 protein coding gastroesophageal sphincter (Tissue)
ENST00000437139.7 ENST00000437139.7_1225_1267_+ 1225–1267 1.00 0.02 0.00 100.0 TMEM107-204 protein coding gastroesophageal sphincter (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 2356.00 84.38 7.22 96.76 SNHG16-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 130.00 4.66 0.40 100.0 SNHG16-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 70.00 11.22 0.21 100.0 SNHG14-207 lncRNA gastroesophageal sphincter (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 52968.00 85.19 162.34 96.38 SNORD105B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 442.00 37.11 1.35 49.11 SNORD121B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 5.00 0.00 0.02 100.0 SNORD127-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 122668.00 97.76 375.97 98.94 SNORD127-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 15708.00 96.17 48.14 100.0 SNORD42B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 725.00 1.40 2.22 100.0 RNY4P25-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 371.00 75.41 1.14 100.0 SNORD121A-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 977.00 7.69 2.99 58.36 SNORD126-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 11488.00 90.40 35.21 97.47 SNORD126-201 snoRNA gastroesophageal sphincter (Tissue)