ENCFF744HOK

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR998CRC
Description: Part of ENCODE experiment ENCSR998CRC. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000408139.1 ENST00000408139.1_5_91_+ 5–91 2298.00 68.43 7.04 100.0 SNORD111-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000408314.1 ENST00000408314.1_5_86_+ 5–86 499.00 48.83 1.53 68.36 SNORD88A-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000408406.1 ENST00000408406.1_32_53_+ 32–53 29.00 96.67 0.09 100.0 MIR548K-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000408479.1 ENST00000408479.1_72_91_+ 72–91 550.00 70.97 1.69 100.0 MIR320B2-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000408537.1 ENST00000408537.1_15_35_+ 15–35 30.00 90.91 0.09 100.0 MIR1271-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000408573.1 ENST00000408573.1_4_52_+ 4–52 534.00 4.67 1.64 100.0 SNORD100-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000408573.1 ENST00000408573.1_4_36_+ 4–36 2830.00 24.73 8.67 100.0 SNORD100-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000408573.1 ENST00000408573.1_26_71_+ 26–71 126.00 1.10 0.39 100.0 SNORD100-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000408573.1 ENST00000408573.1_4_71_+ 4–71 6623.00 57.87 20.30 100.0 SNORD100-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000408587.1 ENST00000408587.1_43_74_+ 43–74 1702.00 59.97 5.22 100.0 SNORD111B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000410361.1 ENST00000410361.1_155_188_+ 155–188 237.00 7.12 0.73 100.0 RNU2-36P-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000410361.1 ENST00000410361.1_79_116_+ 79–116 303.00 9.10 0.93 100.0 RNU2-36P-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 26593.00 97.21 81.51 98.86 SNORD19C-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000410413.1 ENST00000410413.1_33_65_+ 33–65 217.00 0.79 0.67 100.0 SNORD19C-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000410433.1 ENST00000410433.1_7_84_+ 7–84 18121.00 83.20 55.54 96.99 SNORD12B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 510.00 2.34 1.56 100.0 SNORD12B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 1573.00 7.22 4.82 100.0 SNORD12B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 24.00 3.84 0.07 100.0 Y_RNA.609-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 46.00 44.66 0.14 100.0 Y_RNA.612-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000411292.1 ENST00000411292.1_6_82_+ 6–82 1790.00 0.52 5.49 100.0 SNORD71-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 142.00 0.04 0.44 100.0 SNORD71-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 340671.00 98.70 1044.13 99.88 SNORD71-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 1566.00 84.10 4.80 92.55 MIR194-2HG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 251.00 13.48 0.77 52.29 MIR194-2HG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000415386.2 ENST00000415386.2_302_374_+ 302–374 1380.00 21.28 4.23 100.0 LINC01783-201 lncRNA gastroesophageal sphincter (Tissue)