ENCFF744HOK

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR998CRC
Description: Part of ENCODE experiment ENCSR998CRC. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000390725.1 ENST00000390725.1_44_66_+ 44–66 31.00 83.78 0.10 100.0 MIR509-3-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000390751.3 ENST00000390751.3_47_68_+ 47–68 3.00 100.00 0.01 100.0 MIR543-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 6.00 100.00 0.02 100.0 MIR301B-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 77.00 50.00 0.24 78.57 RNU1-82P-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 1759.00 9.75 5.39 100.0 SNORD66-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 6464.00 35.83 19.81 80.22 SNORD66-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 367.00 2.03 1.12 100.0 SNORD66-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 1876.00 10.40 5.75 100.0 SNORD66-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 11.00 39.29 0.03 100.0 U3.17-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 1315.00 91.57 4.03 100.0 SNORD17-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 194.00 65.32 0.59 100.0 SNORD72-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 1222.00 52.49 3.75 100.0 SNORD70B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 42052.00 81.47 128.89 90.34 RNY4P18-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 25513.00 88.69 78.20 100.0 SNORD90-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 1986.00 6.90 6.09 63.88 SNORD90-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 744.00 2.21 2.28 100.0 SNORD69-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 3173.00 9.44 9.73 100.0 SNORD69-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 250.00 0.74 0.77 100.0 SNORD69-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 28226.00 83.94 86.51 100.0 SNORD69-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000391232.1 ENST00000391232.1_9_80_+ 9–80 1296.00 35.71 3.97 40.31 SNORD70-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 670.00 0.87 2.05 100.0 B4GALNT2-202 protein coding gastroesophageal sphincter (Tissue)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 51635.00 66.86 158.26 82.73 B4GALNT2-202 protein coding gastroesophageal sphincter (Tissue)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 512.00 88.58 1.57 100.0 NDE1-202 protein coding gastroesophageal sphincter (Tissue)
ENST00000401258.3 ENST00000401258.3_48_71_+ 48–71 119.00 46.12 0.36 100.0 MIR887-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000401280.3 ENST00000401280.3_49_69_+ 49–69 3.00 100.00 0.01 100.0 MIR889-201 miRNA gastroesophageal sphincter (Tissue)