ENCFF744HOK

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR998CRC
Description: Part of ENCODE experiment ENCSR998CRC. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000385189.3 ENST00000385189.3_25_47_+ 25–47 10.00 90.91 0.03 100.0 MIR196A2-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385196.1 ENST00000385196.1_15_36_+ 15–36 2.00 50.00 0.01 100.0 MIR577-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385199.1 ENST00000385199.1_51_70_+ 51–70 19.00 47.50 0.06 79.17 MIR654-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385200.3 ENST00000385200.3_33_54_+ 33–54 124.00 97.64 0.38 97.64 MIR204-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385212.3 ENST00000385212.3_54_76_+ 54–76 2153.00 94.18 6.60 100.0 MIR152-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385219.1 ENST00000385219.1_23_45_+ 23–45 15.00 68.18 0.05 100.0 MIR138-1-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385227.1 ENST00000385227.1_17_40_+ 17–40 1820.00 85.41 5.58 100.0 MIR30C1-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385235.3 ENST00000385235.3_16_37_+ 16–37 8.00 33.33 0.02 100.0 MIR660-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385236.1 ENST00000385236.1_15_37_+ 15–37 8046.00 49.69 24.66 75.04 MIR125B1-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385236.1 ENST00000385236.1_55_76_+ 55–76 2611.00 16.13 8.00 100.0 MIR125B1-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385254.3 ENST00000385254.3_16_37_+ 16–37 4.00 57.14 0.01 100.0 MIR493-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385255.3 ENST00000385255.3_23_46_+ 23–46 900.99 42.38 2.76 45.25 MIR182-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385255.3 ENST00000385255.3_23_44_+ 23–44 742.04 34.90 2.27 39.12 MIR182-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385259.1 ENST00000385259.1_13_34_+ 13–34 14320.00 87.70 43.89 89.66 MIR100-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385261.1 ENST00000385261.1_51_73_+ 51–73 124.00 88.57 0.38 100.0 MIR301A-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385274.1 ENST00000385274.1_55_74_+ 55–74 2354.00 76.70 7.21 85.91 MIR130A-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385274.1 ENST00000385274.1_55_77_+ 55–77 690.00 22.48 2.11 60.16 MIR130A-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385277.1 ENST00000385277.1_8_29_+ 8–29 228001.00 98.67 698.81 99.05 MIRLET7F2-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385278.3 ENST00000385278.3_61_82_+ 61–82 83.00 69.75 0.25 100.0 MIR652-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385279.1 ENST00000385279.1_16_37_+ 16–37 3.00 100.00 0.01 100.0 MIR653-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385282.3 ENST00000385282.3_63_84_+ 63–84 1511.00 80.33 4.63 100.0 MIR140-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385301.1 ENST00000385301.1_12_32_+ 12–32 3.00 1.71 0.01 100.0 MIR106B-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000385301.1 ENST00000385301.1_52_71_+ 52–71 64.00 36.57 0.20 88.89 MIR106B-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 13242.00 52.78 40.59 97.34 SNORD83A-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 9156.00 36.49 28.06 95.66 SNORD83A-201 snoRNA gastroesophageal sphincter (Tissue)