ENCFF728EUS

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR968DMR
Description: Part of ENCODE experiment ENCSR968DMR. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_523_581_+ 523–581 1087.41 0.27 7.00 55.88 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_1946_1982_+ 1946–1982 1597.00 0.39 10.27 78.71 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1982_+ 1921–1982 196968.00 48.13 1267.14 99.48 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_2522_2560_+ 2522–2560 607.00 0.15 3.90 70.75 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2223_+ 2157–2223 20928.00 5.11 134.63 98.91 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_2532_2560_+ 2532–2560 8758.00 2.14 56.34 100.0 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 38934.00 9.51 250.47 99.43 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 600.00 0.15 3.86 100.0 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 78.00 0.02 0.50 100.0 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 548.00 0.13 3.53 100.0 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 319.00 0.08 2.05 100.0 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 356.00 0.09 2.29 100.0 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 21328.00 5.21 137.21 100.0 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 130.00 0.03 0.84 100.0 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 1114.00 0.27 7.17 100.0 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 44548.00 10.88 286.59 76.62 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 1510.00 0.37 9.71 88.1 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 54.00 0.01 0.35 100.0 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 16.00 0.00 0.10 100.0 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 1030.00 0.25 6.63 83.81 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 839.07 0.21 5.40 43.12 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 713.00 0.17 4.59 100.0 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 1020.00 0.25 6.56 66.23 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 440.00 0.11 2.83 100.0 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 101.00 0.02 0.65 100.0 SNHG1-248 lncRNA sigmoid colon (Tissue)