ENCFF728EUS

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR968DMR
Description: Part of ENCODE experiment ENCSR968DMR. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 1043.00 0.45 6.71 100.0 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 299.00 0.13 1.92 100.0 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 1900.00 0.81 12.22 91.08 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 14.00 0.01 0.09 100.0 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 56.00 0.02 0.36 100.0 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 282.00 0.12 1.81 100.0 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 164926.00 70.47 1061.00 99.74 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 346.00 0.15 2.23 100.0 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 1001.00 0.43 6.44 100.0 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 335.00 0.14 2.16 100.0 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 118.00 0.05 0.76 100.0 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 1392.00 0.59 8.96 100.0 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 8.00 0.00 0.05 100.0 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 120.00 0.05 0.77 100.0 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 1372.00 0.59 8.83 100.0 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 5200.00 2.22 33.45 84.4 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 2589.00 1.11 16.66 100.0 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 25.00 0.01 0.16 100.0 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 177.00 0.08 1.14 100.0 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 673.00 0.29 4.33 100.0 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 45572.00 19.47 293.17 100.0 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 117.00 19.12 0.75 100.0 FTX-219 lncRNA sigmoid colon (Tissue)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 328.00 53.59 2.11 89.13 FTX-219 lncRNA sigmoid colon (Tissue)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 707.00 2.57 4.55 73.95 CTC1-214 protein coding sigmoid colon (Tissue)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 163.00 0.59 1.05 65.99 CTC1-214 protein coding sigmoid colon (Tissue)