ENCFF728EUS

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR968DMR
Description: Part of ENCODE experiment ENCSR968DMR. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 2696.00 78.17 17.34 100.0 GNL3-211 retained intron sigmoid colon (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 214.00 61.49 1.38 100.0 RPL5-205 retained intron sigmoid colon (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 48.00 0.64 0.31 100.0 ZBED9-AS1-201 lncRNA sigmoid colon (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 2245.00 92.62 14.44 100.0 RPS3A-206 retained intron sigmoid colon (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 15061.00 98.45 96.89 100.0 COX7C-203 protein coding sigmoid colon (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 1486.00 4.52 9.56 100.0 RACK1-229 protein coding sigmoid colon (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 6963.21 21.18 44.80 45.22 RACK1-229 protein coding sigmoid colon (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 12014.76 36.54 77.29 63.11 RACK1-229 protein coding sigmoid colon (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 9076.00 27.60 58.39 99.26 RACK1-229 protein coding sigmoid colon (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 66.00 4.44 0.42 85.71 RACK1-230 retained intron sigmoid colon (Tissue)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 11.00 0.74 0.07 100.0 RACK1-230 retained intron sigmoid colon (Tissue)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 498.00 3.53 3.20 100.0 RNA5SP486-201 rRNA pseudogene sigmoid colon (Tissue)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 4493.00 88.95 28.90 100.0 SCARNA5-201 scaRNA sigmoid colon (Tissue)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 1323.00 0.37 8.51 100.0 RNY4-201 misc RNA sigmoid colon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_26_+ 1–26 3123.00 0.87 20.09 100.0 RNY4-201 misc RNA sigmoid colon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 181737.00 50.48 1169.15 98.07 RNY4-201 misc RNA sigmoid colon (Tissue)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 94619.00 26.28 608.70 98.53 RNY4-201 misc RNA sigmoid colon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 4927.00 1.37 31.70 100.0 RNY4-201 misc RNA sigmoid colon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 4044.00 1.12 26.02 68.25 RNY4-201 misc RNA sigmoid colon (Tissue)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 9117.00 2.53 58.65 78.23 RNY4-201 misc RNA sigmoid colon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 19495.00 5.42 125.42 84.52 RNY4-201 misc RNA sigmoid colon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 1642.00 0.46 10.56 100.0 RNY4-201 misc RNA sigmoid colon (Tissue)
ENST00000516507.1 ENST00000516507.1_15_32_+ 15–32 437.00 0.12 2.81 100.0 RNY4-201 misc RNA sigmoid colon (Tissue)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 2549.00 0.71 16.40 76.25 RNY4-201 misc RNA sigmoid colon (Tissue)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 973.00 71.81 6.26 78.66 MIR3142HG-201 lncRNA sigmoid colon (Tissue)