ENCFF728EUS

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR968DMR
Description: Part of ENCODE experiment ENCSR968DMR. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 31167.00 87.08 200.50 95.0 SNORD105B-201 snoRNA sigmoid colon (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 288.00 33.14 1.85 46.45 SNORD121B-201 snoRNA sigmoid colon (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 13057.00 96.16 84.00 100.0 SNORD42B-201 snoRNA sigmoid colon (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 646.00 6.40 4.16 100.0 RNY4P25-201 misc RNA sigmoid colon (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 212.00 78.81 1.36 100.0 SNORD121A-201 snoRNA sigmoid colon (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 3415.00 96.74 21.97 100.0 SNORD126-201 snoRNA sigmoid colon (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 434.00 34.97 2.79 100.0 SNHG12-201 retained intron sigmoid colon (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 3836.00 94.20 24.68 100.0 SMC1A-204 retained intron sigmoid colon (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 576.00 21.86 3.71 100.0 DDX39B-219 retained intron sigmoid colon (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 1178.00 44.71 7.58 100.0 DDX39B-219 retained intron sigmoid colon (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 7.00 0.27 0.05 100.0 DDX39B-219 retained intron sigmoid colon (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 1393.00 84.78 8.96 100.0 RPS8-206 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 4141.00 62.95 26.64 100.0 RPL13-207 retained intron sigmoid colon (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 157.00 2.39 1.01 100.0 RPL13-207 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 266.00 0.07 1.71 24.31 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 5010.00 1.40 32.23 86.39 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 53667.00 14.98 345.25 82.77 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 9.00 0.00 0.06 100.0 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 272517.00 76.06 1753.16 98.08 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 1145.00 0.32 7.37 54.47 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 18.00 0.01 0.12 100.0 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 5674.00 1.58 36.50 65.23 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 1054.00 0.29 6.78 54.5 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 1805.00 0.50 11.61 45.52 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 146.00 0.04 0.94 38.83 EIF4A2-219 retained intron sigmoid colon (Tissue)