ENCFF720JFQ

Library Details

Organism: Homo Sapiens
Biosample: mesendoderm (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR494ATA
Description: Part of ENCODE experiment ENCSR494ATA.
Author: Joe Ecker, Salk

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 375.00 57.78 3.44 98.94 SNORD121B-201 snoRNA mesendoderm (In vitro differentiated cells)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 14.00 1.01 0.13 100.0 SNORD127-201 snoRNA mesendoderm (In vitro differentiated cells)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 1045.00 75.23 9.60 99.15 SNORD127-201 snoRNA mesendoderm (In vitro differentiated cells)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 504.00 40.71 4.63 100.0 SNORD42B-201 snoRNA mesendoderm (In vitro differentiated cells)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 1649.00 48.70 15.15 100.0 RNY4P25-201 misc RNA mesendoderm (In vitro differentiated cells)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 7.00 4.70 0.06 100.0 SNORD121A-201 snoRNA mesendoderm (In vitro differentiated cells)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 249.00 7.97 2.29 52.42 SNORD126-201 snoRNA mesendoderm (In vitro differentiated cells)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 726.00 23.22 6.67 83.16 SNORD126-201 snoRNA mesendoderm (In vitro differentiated cells)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 541.00 61.83 4.97 82.6 SNORD124-201 snoRNA mesendoderm (In vitro differentiated cells)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 67.00 3.28 0.62 100.0 RPL3-212 retained intron mesendoderm (In vitro differentiated cells)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 354.00 17.34 3.25 92.43 RPL3-212 retained intron mesendoderm (In vitro differentiated cells)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 71660.00 97.53 658.21 100.0 SMC1A-204 retained intron mesendoderm (In vitro differentiated cells)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 5979.00 53.45 54.92 99.75 RABGGTB-208 protein coding CDS not defined mesendoderm (In vitro differentiated cells)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 316.00 38.87 2.90 100.0 DDX39B-219 retained intron mesendoderm (In vitro differentiated cells)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 2.00 0.25 0.02 66.67 DDX39B-219 retained intron mesendoderm (In vitro differentiated cells)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 26.00 3.20 0.24 100.0 DDX39B-219 retained intron mesendoderm (In vitro differentiated cells)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 693.00 25.15 6.37 100.0 RPS8-206 protein coding CDS not defined mesendoderm (In vitro differentiated cells)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 170.00 15.23 1.56 100.0 RPL13-207 retained intron mesendoderm (In vitro differentiated cells)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 553.00 49.55 5.08 100.0 RPL13-207 retained intron mesendoderm (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 2507.00 2.14 23.03 66.98 EIF4A2-219 retained intron mesendoderm (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 24.00 0.02 0.22 100.0 EIF4A2-219 retained intron mesendoderm (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 4752.00 4.06 43.65 90.88 EIF4A2-219 retained intron mesendoderm (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 686.00 0.59 6.30 96.48 EIF4A2-219 retained intron mesendoderm (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 1439.00 1.23 13.22 51.41 EIF4A2-219 retained intron mesendoderm (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 14.00 0.01 0.13 22.22 EIF4A2-219 retained intron mesendoderm (In vitro differentiated cells)