ENCFF000JJV

Library Details

Organism: Homo Sapiens
Biosample: mesenchymal stem cell of adipose (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVD
Description: Part of ENCODE experiment ENCSR000CVD. The libraries contained in this experiment come from adipose derived mesenchymal stem cell primary whole cells, hMSC-AT isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 114283.00 13.08 3745.16 75.76 GAS5-230 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 2624.00 58.00 85.99 100.0 ENST00000651540 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 103635.00 12.04 3396.21 98.46 SNHG29-232 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 707949.00 82.27 23200.12 96.41 SNHG29-232 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1451_+ 1361–1451 3032.00 0.35 99.36 100.0 SNHG29-232 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 1.00 0.00 0.03 100.0 SNHG29-232 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 1565.00 0.18 51.29 100.0 SNHG29-232 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 3310.00 12.53 108.47 100.0 SNHG1-248 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 5305.00 20.09 173.85 100.0 SNHG1-248 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 9680.00 36.65 317.22 100.0 SNHG1-248 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 1294.00 1.42 42.41 100.0 SNHG5-273 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 21754.00 23.84 712.90 74.36 SNHG5-273 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 52581.00 57.61 1723.13 90.68 SNHG5-273 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 1081.00 87.39 35.43 100.0 SNHG14-336 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 2709.00 68.08 88.78 100.0 NCL-216 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 21712.99 51.76 711.55 70.1 SNHG19-202 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 9216.29 21.97 302.03 32.66 SNHG19-202 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000693179.2 ENST00000693179.2_532_619_+ 532–619 1027.00 45.12 33.66 100.0 SNHG8-214 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000722183.1 ENST00000722183.1_108_192_+ 108–192 16698.00 82.94 547.21 100.0 ENST00000722183 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000747512.1 ENST00000747512.1_63_156_+ 63–156 28135.00 86.71 922.01 100.0 ENST00000747512 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000772672.1 ENST00000772672.1_26_113_+ 26–113 21.00 0.08 0.69 100.0 ENST00000772672 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000772672.1 ENST00000772672.1_21_113_+ 21–113 23206.00 88.49 760.48 100.0 ENST00000772672 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000775062.1 ENST00000775062.1_1328_1392_+ 1328–1392 1.00 4.55 0.03 100.0 SNHG12-223 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000788343.1 ENST00000788343.1_17_107_+ 17–107 19.00 7.72 0.62 67.86 ENST00000788343 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000823279.1 ENST00000823279.1_126_169_+ 126–169 1.00 0.01 0.03 100.0 ENST00000823279 lncRNA mesenchymal stem cell of adipose (Primary cell)