ENCFF000JJV

Library Details

Organism: Homo Sapiens
Biosample: mesenchymal stem cell of adipose (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVD
Description: Part of ENCODE experiment ENCSR000CVD. The libraries contained in this experiment come from adipose derived mesenchymal stem cell primary whole cells, hMSC-AT isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 258.00 11.33 8.45 100.0 RACK1-230 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 8909.00 4.61 291.96 100.0 SNHG6-204 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 175556.00 90.86 5753.13 100.0 SNHG6-204 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 12.00 1.34 0.39 36.36 WDR74-204 protein coding mesenchymal stem cell of adipose (Primary cell)
ENST00000527983.5 ENST00000527983.5_1314_1406_+ 1314–1406 1875.00 53.77 61.45 69.24 HSPA8-211 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 8327.00 79.49 272.88 100.0 RPS13-208 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 21965.00 76.57 719.81 100.0 HSPA8-215 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000567229.5 ENST00000567229.5_479_567_+ 479–567 3395.00 65.82 111.26 100.0 RPL4-214 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 3944.00 38.88 129.25 100.0 ENST00000570843 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 3462.00 34.13 113.45 100.0 ENST00000570843 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 0.95 0.01 0.03 15.86 C19orf48P-203 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 12.11 0.10 0.40 86.48 C19orf48P-203 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 2715.00 22.31 88.97 100.0 C19orf48P-203 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 536.00 25.52 17.57 100.0 RPS11-206 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000612233.1 ENST00000612233.1_681_767_+ 681–767 1568.00 43.81 51.38 100.0 NOP56-219 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 139.35 0.78 4.57 38.28 U2.3-201 snRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 6200.00 34.56 203.18 100.0 U2.3-201 snRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 48.00 0.27 1.57 90.57 U2.3-201 snRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 241.91 1.35 7.93 66.46 U2.3-201 snRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 2.61 0.01 0.09 16.3 U2.3-201 snRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 6.21 0.03 0.20 62.1 U2.3-201 snRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000640631.2 ENST00000640631.2_4119_4213_+ 4119–4213 8.00 1.90 0.26 100.0 SNHG14-224 lncRNA mesenchymal stem cell of adipose (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1732_+ 1641–1732 725.00 0.08 23.76 100.0 GAS5-230 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 570641.00 65.29 18700.41 95.88 GAS5-230 retained intron mesenchymal stem cell of adipose (Primary cell)
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 3597.00 0.41 117.88 100.0 GAS5-230 retained intron mesenchymal stem cell of adipose (Primary cell)