ENCFF714LDG

Library Details

Organism: Homo Sapiens
Biosample: trophoblast cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR083HYC
Description: Part of ENCODE experiment ENCSR083HYC.
Author: Joe Ecker, Salk

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 1.00 0.11 0.01 100.0 TMEM107-204 protein coding trophoblast cell (In vitro differentiated cells)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 2.00 0.43 0.01 100.0 SNHG16-201 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 1.00 0.21 0.01 100.0 SNHG16-201 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 204.00 24.67 1.35 99.51 SNORD105B-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 23.00 6.89 0.15 100.0 SNORD121B-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 15.00 6.70 0.10 93.75 SNORD127-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 15.00 6.70 0.10 100.0 SNORD127-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 230.00 29.11 1.52 100.0 SNORD42B-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 1919.00 40.94 12.71 100.0 RNY4P25-201 misc RNA trophoblast cell (In vitro differentiated cells)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 2.00 1.32 0.01 100.0 SNORD121A-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 6.00 0.42 0.04 66.67 SNORD126-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 12.00 0.84 0.08 80.0 SNORD126-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 7.00 2.75 0.05 77.78 SNORD124-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 6.00 0.27 0.04 85.71 RPL3-212 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 2.00 0.09 0.01 100.0 RPL3-212 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 106763.00 98.13 707.22 100.0 SMC1A-204 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 77.00 1.57 0.51 100.0 RABGGTB-208 protein coding CDS not defined trophoblast cell (In vitro differentiated cells)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 108.00 10.13 0.72 100.0 DDX39B-219 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 431.00 40.43 2.86 100.0 DDX39B-219 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 69.00 2.82 0.46 100.0 RPS8-206 protein coding CDS not defined trophoblast cell (In vitro differentiated cells)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 3.00 0.19 0.02 100.0 RPL13-207 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 1021.00 64.21 6.76 100.0 RPL13-207 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 958.00 1.95 6.35 95.42 EIF4A2-219 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 3499.00 7.13 23.18 55.87 EIF4A2-219 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 21.00 0.04 0.14 17.95 EIF4A2-219 retained intron trophoblast cell (In vitro differentiated cells)