ENCFF694VGD

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR996VHB
Description: Part of ENCODE experiment ENCSR996VHB. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 67.00 0.09 0.38 41.61 RNY4-201 misc RNA upper lobe of left lung (Tissue)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 4800.00 6.54 27.00 78.51 RNY4-201 misc RNA upper lobe of left lung (Tissue)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 3779.00 5.15 21.26 99.0 RNY4-201 misc RNA upper lobe of left lung (Tissue)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 42598.00 82.73 239.62 90.15 MIR3142HG-201 lncRNA upper lobe of left lung (Tissue)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 59350.00 80.20 333.86 89.7 MIR151A-201 miRNA upper lobe of left lung (Tissue)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 6663.00 9.00 37.48 100.0 MIR151A-201 miRNA upper lobe of left lung (Tissue)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 1898.00 98.65 10.68 100.0 DENND3-221 protein coding upper lobe of left lung (Tissue)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 483.00 1.48 2.72 31.04 WDR74-204 protein coding upper lobe of left lung (Tissue)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 327.00 1.00 1.84 100.0 WDR74-204 protein coding upper lobe of left lung (Tissue)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 673.00 2.06 3.79 100.0 WDR74-204 protein coding upper lobe of left lung (Tissue)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 9171.00 28.05 51.59 68.22 WDR74-204 protein coding upper lobe of left lung (Tissue)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 359.00 1.10 2.02 100.0 WDR74-204 protein coding upper lobe of left lung (Tissue)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 1073.00 3.28 6.04 68.96 WDR74-204 protein coding upper lobe of left lung (Tissue)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 152.00 24.72 0.86 100.0 SCARNA9-201 lncRNA upper lobe of left lung (Tissue)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 49642.00 95.14 279.25 100.0 TAF1D-215 retained intron upper lobe of left lung (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 478864.00 77.43 2693.72 78.97 ENST00000548801 lncRNA upper lobe of left lung (Tissue)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 1049.00 14.51 5.90 100.0 ENST00000554988 lncRNA upper lobe of left lung (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 1579.00 21.85 8.88 100.0 ENST00000554988 lncRNA upper lobe of left lung (Tissue)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 19312.00 91.15 108.63 100.0 SNHG14-220 retained intron upper lobe of left lung (Tissue)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 32.00 0.15 0.18 100.0 SNHG14-220 retained intron upper lobe of left lung (Tissue)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 316.00 1.49 1.78 100.0 SNHG14-220 retained intron upper lobe of left lung (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 234.00 1.10 1.32 100.0 SNHG14-220 retained intron upper lobe of left lung (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 1099.00 96.32 6.18 100.0 TEKT4P2-201 transcribed unprocessed pseudogene upper lobe of left lung (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 1009.00 4.26 5.68 100.0 RPL4-202 retained intron upper lobe of left lung (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 18876.00 79.79 106.18 94.1 RPL4-202 retained intron upper lobe of left lung (Tissue)