ENCFF694VGD

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR996VHB
Description: Part of ENCODE experiment ENCSR996VHB. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 174.00 75.98 0.98 100.0 ENST00000436739 lncRNA upper lobe of left lung (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 198.00 5.19 1.11 100.0 TMEM107-204 protein coding upper lobe of left lung (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 122.00 3.20 0.69 8.41 TMEM107-204 protein coding upper lobe of left lung (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 966.00 25.31 5.43 85.64 TMEM107-204 protein coding upper lobe of left lung (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 104.00 13.05 0.59 100.0 SNHG16-201 lncRNA upper lobe of left lung (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 18436.00 78.58 103.71 94.93 SNORD105B-201 snoRNA upper lobe of left lung (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 333.00 41.62 1.87 68.94 SNORD121B-201 snoRNA upper lobe of left lung (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 997.00 58.96 5.61 100.0 SNORD127-201 snoRNA upper lobe of left lung (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 9108.00 93.77 51.23 100.0 SNORD42B-201 snoRNA upper lobe of left lung (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 505.00 11.57 2.84 100.0 RNY4P25-201 misc RNA upper lobe of left lung (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 239.00 73.31 1.34 100.0 SNORD121A-201 snoRNA upper lobe of left lung (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 396.00 84.80 2.23 100.0 SNORD126-201 snoRNA upper lobe of left lung (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 2993.00 55.64 16.84 100.0 SNHG12-201 retained intron upper lobe of left lung (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 6661.00 98.01 37.47 100.0 SMC1A-204 retained intron upper lobe of left lung (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 273.00 15.48 1.54 100.0 DDX39B-219 retained intron upper lobe of left lung (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 794.00 45.04 4.47 100.0 DDX39B-219 retained intron upper lobe of left lung (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 3976.00 86.68 22.37 100.0 RPS8-206 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 203.00 4.30 1.14 96.67 RPL13-207 retained intron upper lobe of left lung (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 2882.00 61.11 16.21 100.0 RPL13-207 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 1931.00 0.63 10.86 44.24 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 2955.00 0.96 16.62 100.0 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 16954.00 5.51 95.37 70.32 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 370.00 0.12 2.08 43.89 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 1974.00 0.64 11.10 36.68 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 767.00 0.25 4.31 52.68 EIF4A2-219 retained intron upper lobe of left lung (Tissue)