ENCFF685KEG

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR418FVT
Description: Part of ENCODE experiment ENCSR418FVT. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 881.00 5.16 5.05 64.4 RABGGTB-213 protein coding CDS not defined stomach (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 176.00 1.03 1.01 100.0 RABGGTB-213 protein coding CDS not defined stomach (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 4149.00 24.31 23.77 100.0 RABGGTB-213 protein coding CDS not defined stomach (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 1006.00 14.37 5.76 100.0 GNL3-211 retained intron stomach (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 5516.00 78.77 31.61 100.0 GNL3-211 retained intron stomach (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 600.00 68.42 3.44 100.0 RPL5-205 retained intron stomach (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 326.00 4.39 1.87 100.0 ZBED9-AS1-201 lncRNA stomach (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 6459.00 91.45 37.01 100.0 RPS3A-206 retained intron stomach (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 31650.00 97.27 181.35 100.0 COX7C-203 protein coding stomach (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 25237.00 29.60 144.61 99.75 RACK1-229 protein coding stomach (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 4425.00 5.19 25.35 100.0 RACK1-229 protein coding stomach (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 10972.52 12.87 62.87 29.88 RACK1-229 protein coding stomach (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 39651.53 46.51 227.20 81.78 RACK1-229 protein coding stomach (Tissue)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 15.00 0.32 0.09 100.0 RACK1-230 retained intron stomach (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 167.00 3.62 0.96 91.76 RACK1-230 retained intron stomach (Tissue)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 91.00 0.80 0.52 100.0 RNA5SP486-201 rRNA pseudogene stomach (Tissue)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 7683.00 91.32 44.02 100.0 SCARNA5-201 scaRNA stomach (Tissue)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 121565.00 61.81 696.56 99.78 RNY4-201 misc RNA stomach (Tissue)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 245.00 0.12 1.40 100.0 RNY4-201 misc RNA stomach (Tissue)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 295.00 0.15 1.69 71.95 RNY4-201 misc RNA stomach (Tissue)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 7190.00 3.66 41.20 78.53 RNY4-201 misc RNA stomach (Tissue)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 205.00 0.10 1.17 100.0 RNY4-201 misc RNA stomach (Tissue)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 1758.00 0.89 10.07 64.66 RNY4-201 misc RNA stomach (Tissue)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 53.00 0.03 0.30 100.0 RNY4-201 misc RNA stomach (Tissue)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 247.00 0.13 1.42 74.62 RNY4-201 misc RNA stomach (Tissue)