ENCFF682YQJ

Library Details

Organism: Homo Sapiens
Biosample: spleen (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR593MVW
Description: Part of ENCODE experiment ENCSR593MVW. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 205.00 0.04 1.00 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 315528.00 54.62 1536.46 99.85 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 1725.00 0.30 8.40 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 21384.00 3.70 104.13 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 2296.00 0.40 11.18 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 1336.00 0.23 6.51 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 10178.00 1.76 49.56 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 35.00 0.01 0.17 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 732.00 0.13 3.56 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 2848.00 0.49 13.87 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 42420.00 7.34 206.56 88.72 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 24119.00 4.18 117.45 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 184.00 0.03 0.90 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 604.00 0.10 2.94 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 5921.00 1.02 28.83 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 108185.00 18.73 526.81 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 65.00 9.66 0.32 100.0 FTX-219 lncRNA spleen (Tissue)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 413.00 61.37 2.01 90.97 FTX-219 lncRNA spleen (Tissue)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 406.00 2.12 1.98 48.51 CTC1-214 protein coding spleen (Tissue)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 227.00 1.19 1.11 73.23 CTC1-214 protein coding spleen (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 9490.00 49.63 46.21 86.06 CTC1-214 protein coding spleen (Tissue)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 431.00 2.25 2.10 51.49 CTC1-214 protein coding spleen (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 3231.00 16.90 15.73 53.6 CTC1-214 protein coding spleen (Tissue)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 895.00 4.68 4.36 100.0 CTC1-214 protein coding spleen (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 861.00 4.50 4.19 100.0 CTC1-214 protein coding spleen (Tissue)