ENCFF682YQJ

Library Details

Organism: Homo Sapiens
Biosample: spleen (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR593MVW
Description: Part of ENCODE experiment ENCSR593MVW. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 1634.00 30.23 7.96 100.0 SCARNA4-202 scaRNA spleen (Tissue)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 1791.00 76.15 8.72 100.0 ENST00000625572 miRNA spleen (Tissue)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 5077.00 93.33 24.72 100.0 ENST00000630615 snoRNA spleen (Tissue)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 271.00 41.12 1.32 100.0 DMRT2-209 protein coding spleen (Tissue)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 182.00 27.62 0.89 100.0 DMRT2-209 protein coding spleen (Tissue)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 3107.00 53.51 15.13 100.0 SNORD98-201 snoRNA spleen (Tissue)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 1404.00 24.18 6.84 100.0 SNORD98-201 snoRNA spleen (Tissue)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 92946.40 68.58 452.60 73.53 MIR106AHG-201 lncRNA spleen (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3393_+ 3371–3393 25.10 0.02 0.12 32.18 MIR106AHG-201 lncRNA spleen (Tissue)
ENST00000636668.1 ENST00000636668.1_2902_2924_+ 2902–2924 14.00 0.01 0.07 100.0 MIR106AHG-201 lncRNA spleen (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3391_+ 3371–3391 55.38 0.04 0.27 71.0 MIR106AHG-201 lncRNA spleen (Tissue)
ENST00000638012.2 ENST00000638012.2_1_28_+ 1–28 323.00 35.38 1.57 100.0 MEG8-222 lncRNA spleen (Tissue)
ENST00000638012.2 ENST00000638012.2_1_70_+ 1–70 246.00 26.94 1.20 100.0 MEG8-222 lncRNA spleen (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 181.00 4.61 0.88 100.0 SNHG14-224 lncRNA spleen (Tissue)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 604.00 15.40 2.94 75.88 SNHG14-224 lncRNA spleen (Tissue)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 401.00 10.22 1.95 63.96 SNHG14-224 lncRNA spleen (Tissue)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 14092.29 8.23 68.62 47.01 5S_rRNA.20-201 rRNA pseudogene spleen (Tissue)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 586.00 4.25 2.85 100.0 HSPA9-211 retained intron spleen (Tissue)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 6408.00 46.51 31.20 67.11 HSPA9-211 retained intron spleen (Tissue)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 12250.00 67.93 59.65 100.0 DNM3OS-205 lncRNA spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 2228.00 0.39 10.85 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 1400.00 0.24 6.82 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 9682.00 1.68 47.15 95.1 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 168.00 0.03 0.82 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 932.00 0.16 4.54 100.0 GAS5-230 retained intron spleen (Tissue)