ENCFF657CXK

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR383PLJ
Description: Part of ENCODE experiment ENCSR383PLJ. The libraries contained in this Experiment come from tissue sub-sections of a53 year old female's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 433.00 2.21 1.76 73.02 WDR74-204 protein coding esophagus muscularis mucosa (Tissue)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 287.00 1.47 1.17 100.0 WDR74-204 protein coding esophagus muscularis mucosa (Tissue)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 98.00 0.50 0.40 100.0 WDR74-204 protein coding esophagus muscularis mucosa (Tissue)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 265.00 1.35 1.08 100.0 WDR74-204 protein coding esophagus muscularis mucosa (Tissue)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 6044.00 79.21 24.60 100.0 HSPA8-211 retained intron esophagus muscularis mucosa (Tissue)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 137.00 12.72 0.56 100.0 SCARNA9-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 41093.00 95.41 167.28 100.0 TAF1D-215 retained intron esophagus muscularis mucosa (Tissue)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 308.00 0.72 1.25 100.0 TAF1D-215 retained intron esophagus muscularis mucosa (Tissue)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 4.00 0.12 0.02 100.0 HSPA8-215 retained intron esophagus muscularis mucosa (Tissue)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 2722.00 84.69 11.08 100.0 HSPA8-215 retained intron esophagus muscularis mucosa (Tissue)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 64.00 1.99 0.26 100.0 HSPA8-215 retained intron esophagus muscularis mucosa (Tissue)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 83.00 17.74 0.34 100.0 RPS2-215 retained intron esophagus muscularis mucosa (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 728615.00 81.12 2965.94 82.85 ENST00000548801 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 400.00 17.59 1.63 100.0 ENST00000554988 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 177.00 7.78 0.72 100.0 ENST00000554988 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 564.00 24.80 2.30 100.0 ENST00000554988 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 34358.00 72.07 139.86 100.0 SNHG14-220 retained intron esophagus muscularis mucosa (Tissue)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 10515.00 22.06 42.80 100.0 SNHG14-220 retained intron esophagus muscularis mucosa (Tissue)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 746.00 1.56 3.04 100.0 SNHG14-220 retained intron esophagus muscularis mucosa (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 262.00 0.55 1.07 100.0 SNHG14-220 retained intron esophagus muscularis mucosa (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 1575.00 99.49 6.41 100.0 TEKT4P2-201 transcribed unprocessed pseudogene esophagus muscularis mucosa (Tissue)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 270.00 0.57 1.10 100.0 RPL4-202 retained intron esophagus muscularis mucosa (Tissue)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 6.00 0.01 0.02 100.0 RPL4-202 retained intron esophagus muscularis mucosa (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 856.00 1.81 3.48 100.0 RPL4-202 retained intron esophagus muscularis mucosa (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 40767.00 86.30 165.95 93.91 RPL4-202 retained intron esophagus muscularis mucosa (Tissue)