ENCFF657CXK

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR383PLJ
Description: Part of ENCODE experiment ENCSR383PLJ. The libraries contained in this Experiment come from tissue sub-sections of a53 year old female's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 345.00 0.09 1.40 100.0 SNORD71-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 383941.00 98.63 1562.89 99.88 SNORD71-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 4695.00 91.82 19.11 96.39 MIR194-2HG-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 375.00 7.33 1.53 42.18 MIR194-2HG-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000415386.2 ENST00000415386.2_302_374_+ 302–374 128.00 6.29 0.52 100.0 LINC01783-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 11.00 100.00 0.04 100.0 RPS7P15-201 processed pseudogene esophagus muscularis mucosa (Tissue)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 699.00 17.33 2.85 87.7 SNORD62B-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 184.00 4.56 0.75 100.0 SNORD62B-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 721.00 17.88 2.93 100.0 SNORD62B-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 24.00 0.60 0.10 100.0 SNORD62B-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 626.00 15.52 2.55 100.0 SNORD62B-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 20.00 90.91 0.08 100.0 MRPL32-203 nonsense mediated decay esophagus muscularis mucosa (Tissue)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 14.00 70.00 0.06 100.0 ENST00000436739 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 155.00 2.14 0.63 100.0 TMEM107-204 protein coding esophagus muscularis mucosa (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 1975.00 27.26 8.04 91.44 TMEM107-204 protein coding esophagus muscularis mucosa (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 2913.00 40.21 11.86 96.04 TMEM107-204 protein coding esophagus muscularis mucosa (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 395.00 5.45 1.61 100.0 TMEM107-204 protein coding esophagus muscularis mucosa (Tissue)
ENST00000437139.7 ENST00000437139.7_1225_1267_+ 1225–1267 6.00 0.08 0.02 100.0 TMEM107-204 protein coding esophagus muscularis mucosa (Tissue)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 249.00 14.00 1.01 100.0 SNHG16-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 1153.00 64.81 4.69 95.29 SNHG16-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 88.00 32.84 0.36 100.0 SNHG14-207 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 40662.00 82.94 165.52 95.35 SNORD105B-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 349.00 34.62 1.42 54.79 SNORD121B-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 132.00 0.08 0.54 100.0 SNORD127-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 153987.00 97.93 626.83 99.15 SNORD127-201 snoRNA esophagus muscularis mucosa (Tissue)