ENCFF655CDV

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR635SLB
Description: Part of ENCODE experiment ENCSR635SLB. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000401182.3 ENST00000401182.3_11_31_+ 11–31 1.00 50.00 0.00 100.0 MIR450B-201 miRNA sigmoid colon (Tissue)
ENST00000401258.3 ENST00000401258.3_48_71_+ 48–71 55.00 34.38 0.20 100.0 MIR887-201 miRNA sigmoid colon (Tissue)
ENST00000401280.3 ENST00000401280.3_49_69_+ 49–69 27.00 87.10 0.10 100.0 MIR889-201 miRNA sigmoid colon (Tissue)
ENST00000408406.1 ENST00000408406.1_32_53_+ 32–53 13.00 76.47 0.05 100.0 MIR548K-201 miRNA sigmoid colon (Tissue)
ENST00000408479.1 ENST00000408479.1_72_91_+ 72–91 770.00 65.59 2.80 100.0 MIR320B2-201 miRNA sigmoid colon (Tissue)
ENST00000408537.1 ENST00000408537.1_15_35_+ 15–35 26.00 83.87 0.09 100.0 MIR1271-201 miRNA sigmoid colon (Tissue)
ENST00000408573.1 ENST00000408573.1_4_52_+ 4–52 1007.00 3.79 3.66 100.0 SNORD100-201 snoRNA sigmoid colon (Tissue)
ENST00000408573.1 ENST00000408573.1_26_71_+ 26–71 329.00 1.24 1.20 100.0 SNORD100-201 snoRNA sigmoid colon (Tissue)
ENST00000408573.1 ENST00000408573.1_4_71_+ 4–71 20992.00 79.04 76.36 100.0 SNORD100-201 snoRNA sigmoid colon (Tissue)
ENST00000408573.1 ENST00000408573.1_4_36_+ 4–36 2466.00 9.28 8.97 100.0 SNORD100-201 snoRNA sigmoid colon (Tissue)
ENST00000408587.1 ENST00000408587.1_43_74_+ 43–74 2405.00 66.25 8.75 100.0 SNORD111B-201 snoRNA sigmoid colon (Tissue)
ENST00000410361.1 ENST00000410361.1_155_188_+ 155–188 560.00 16.93 2.04 100.0 RNU2-36P-201 snRNA sigmoid colon (Tissue)
ENST00000410361.1 ENST00000410361.1_79_116_+ 79–116 184.00 5.56 0.67 100.0 RNU2-36P-201 snRNA sigmoid colon (Tissue)
ENST00000410413.1 ENST00000410413.1_33_65_+ 33–65 822.00 1.57 2.99 100.0 SNORD19C-201 snoRNA sigmoid colon (Tissue)
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 50363.00 96.38 183.19 99.09 SNORD19C-201 snoRNA sigmoid colon (Tissue)
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 1712.00 77.89 6.23 100.0 SNORD12B-201 snoRNA sigmoid colon (Tissue)
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 46.00 2.09 0.17 100.0 SNORD12B-201 snoRNA sigmoid colon (Tissue)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 38.00 5.48 0.14 100.0 Y_RNA.609-201 misc RNA sigmoid colon (Tissue)
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 49.00 20.16 0.18 100.0 Y_RNA.612-201 misc RNA sigmoid colon (Tissue)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 241.00 10.25 0.88 100.0 SNORD71-201 snoRNA sigmoid colon (Tissue)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 614.00 26.12 2.23 100.0 SNORD71-201 snoRNA sigmoid colon (Tissue)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 2716.00 86.97 9.88 96.01 MIR194-2HG-201 lncRNA sigmoid colon (Tissue)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 345.00 11.05 1.25 45.16 MIR194-2HG-201 lncRNA sigmoid colon (Tissue)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 2.00 66.67 0.01 100.0 RPS7P15-201 processed pseudogene sigmoid colon (Tissue)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 637.00 18.35 2.32 100.0 SNORD62B-201 snoRNA sigmoid colon (Tissue)