ENCFF655CDV

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR635SLB
Description: Part of ENCODE experiment ENCSR635SLB. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000389680.2 ENST00000389680.2_316_354_+ 316–354 390.00 22.56 1.42 100.0 MT-RNR1-201 Mt rRNA sigmoid colon (Tissue)
ENST00000390180.1 ENST00000390180.1_64_86_+ 64–86 123.00 75.93 0.45 100.0 MIR454-201 miRNA sigmoid colon (Tissue)
ENST00000390204.1 ENST00000390204.1_51_72_+ 51–72 86.00 63.70 0.31 100.0 MIR501-201 miRNA sigmoid colon (Tissue)
ENST00000390225.1 ENST00000390225.1_30_51_+ 30–51 517.00 90.70 1.88 100.0 MIR769-201 miRNA sigmoid colon (Tissue)
ENST00000390689.3 ENST00000390689.3_37_51_+ 37–51 138.00 77.09 0.50 100.0 KRTAP19-1-201 protein coding sigmoid colon (Tissue)
ENST00000390708.1 ENST00000390708.1_11_33_+ 11–33 10.00 33.33 0.04 100.0 MIR708-201 miRNA sigmoid colon (Tissue)
ENST00000390725.1 ENST00000390725.1_44_66_+ 44–66 3.00 60.00 0.01 100.0 MIR509-3-201 miRNA sigmoid colon (Tissue)
ENST00000390751.3 ENST00000390751.3_47_68_+ 47–68 2.00 100.00 0.01 100.0 MIR543-201 miRNA sigmoid colon (Tissue)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 10.00 83.33 0.04 100.0 MIR301B-201 miRNA sigmoid colon (Tissue)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 234.00 48.25 0.85 71.12 RNU1-82P-201 snRNA sigmoid colon (Tissue)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 4162.00 33.43 15.14 72.28 SNORD66-201 snoRNA sigmoid colon (Tissue)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 391.00 3.14 1.42 100.0 SNORD66-201 snoRNA sigmoid colon (Tissue)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 1153.00 9.26 4.19 100.0 SNORD66-201 snoRNA sigmoid colon (Tissue)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 28.00 59.57 0.10 100.0 U3.17-201 snoRNA sigmoid colon (Tissue)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 3035.00 85.20 11.04 100.0 SNORD17-201 snoRNA sigmoid colon (Tissue)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 304.00 70.53 1.11 100.0 SNORD72-201 snoRNA sigmoid colon (Tissue)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 1915.00 72.87 6.97 100.0 SNORD70B-201 snoRNA sigmoid colon (Tissue)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 5777.00 61.37 21.01 92.57 RNY4P18-201 misc RNA sigmoid colon (Tissue)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 40379.00 75.80 146.87 100.0 SNORD69-201 snoRNA sigmoid colon (Tissue)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 5284.00 9.92 19.22 100.0 SNORD69-201 snoRNA sigmoid colon (Tissue)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 4101.00 7.70 14.92 100.0 SNORD69-201 snoRNA sigmoid colon (Tissue)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 485.00 0.91 1.76 100.0 SNORD69-201 snoRNA sigmoid colon (Tissue)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 345.00 1.63 1.25 100.0 B4GALNT2-202 protein coding sigmoid colon (Tissue)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 17427.00 82.11 63.39 88.43 B4GALNT2-202 protein coding sigmoid colon (Tissue)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 359.00 80.67 1.31 100.0 NDE1-202 protein coding sigmoid colon (Tissue)