ENCFF645FQS

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR525WFB
Description: Part of ENCODE experiment ENCSR525WFB. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_1194_1268_+ 1194–1268 45.00 0.02 0.24 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 253.00 0.09 1.33 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 349.00 0.13 1.84 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 7798.00 2.90 41.05 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 48.00 0.02 0.25 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 1433.00 0.53 7.54 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 35715.00 13.28 187.99 81.54 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_2507_2560_+ 2507–2560 4.00 0.00 0.02 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 68931.00 25.62 362.83 98.47 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 73.00 0.03 0.38 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 5.00 0.00 0.03 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 1588.00 0.59 8.36 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 778.00 0.29 4.10 84.38 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 637.23 0.24 3.35 53.5 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 1560.00 0.58 8.21 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 411.00 0.15 2.16 59.05 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 747.00 0.28 3.93 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 1.00 0.00 0.01 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 79.00 0.03 0.42 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 914.00 23.28 4.81 100.0 SNHG14-315 lncRNA transverse colon (Tissue)
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 887.00 22.59 4.67 80.78 SNHG14-315 lncRNA transverse colon (Tissue)
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 697.00 17.75 3.67 74.15 SNHG14-315 lncRNA transverse colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 1238.00 0.39 6.52 100.0 SNHG5-273 lncRNA transverse colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 179561.64 55.91 945.16 62.8 SNHG5-273 lncRNA transverse colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 28.00 0.01 0.15 100.0 SNHG5-273 lncRNA transverse colon (Tissue)