ENCFF645FQS

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR525WFB
Description: Part of ENCODE experiment ENCSR525WFB. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 275.00 2.13 1.45 100.0 RPL4-202 retained intron transverse colon (Tissue)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 58.00 0.02 0.31 100.0 ENST00000563103 lncRNA transverse colon (Tissue)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 1992.00 42.55 10.49 100.0 RPL4-207 retained intron transverse colon (Tissue)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 382.00 8.16 2.01 100.0 RPL4-207 retained intron transverse colon (Tissue)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 358889.00 97.11 1889.08 99.32 ENST00000565336 lncRNA transverse colon (Tissue)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 3218.00 0.87 16.94 81.45 ENST00000565336 lncRNA transverse colon (Tissue)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 2804.00 1.68 14.76 100.0 RBMX-210 retained intron transverse colon (Tissue)
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 122.00 0.07 0.64 100.0 RBMX-210 retained intron transverse colon (Tissue)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 1485.00 0.89 7.82 100.0 RBMX-210 retained intron transverse colon (Tissue)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 139953.00 83.67 736.67 87.33 RBMX-210 retained intron transverse colon (Tissue)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 320.00 26.71 1.68 100.0 RPL4-214 retained intron transverse colon (Tissue)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 92.00 7.68 0.48 100.0 RPL4-214 retained intron transverse colon (Tissue)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 3682.76 24.32 19.38 32.01 POLG-DT-202 lncRNA transverse colon (Tissue)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 9527.90 62.92 50.15 82.23 POLG-DT-202 lncRNA transverse colon (Tissue)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 160.00 1.06 0.84 100.0 POLG-DT-202 lncRNA transverse colon (Tissue)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 2641.00 37.11 13.90 100.0 ENST00000570843 lncRNA transverse colon (Tissue)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 941.00 67.55 4.95 100.0 MIR497HG-207 lncRNA transverse colon (Tissue)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 34544.00 98.14 181.83 98.51 MIR22HG-212 lncRNA transverse colon (Tissue)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 89.00 0.48 0.47 42.79 SNORD53B-201 snoRNA transverse colon (Tissue)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 17152.00 93.10 90.28 95.17 SNORD53B-201 snoRNA transverse colon (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 119.00 0.65 0.63 57.21 SNORD53B-201 snoRNA transverse colon (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 180.00 66.42 0.95 100.0 ENST00000578036 lncRNA transverse colon (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 236.00 84.29 1.24 100.0 RPL23A-207 protein coding transverse colon (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 1140.00 94.21 6.00 100.0 MIR744-201 miRNA transverse colon (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 1168.00 82.54 6.15 100.0 MIR378C-201 miRNA transverse colon (Tissue)