ENCFF643IED

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR737NPO
Description: Part of ENCODE experiment ENCSR737NPO. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000365328.1 ENST00000365328.1_282_331_+ 282–331 6.00 0.35 0.04 100.0 7SK.1-201 misc RNA upper lobe of left lung (Tissue)
ENST00000365328.1 ENST00000365328.1_1_63_+ 1–63 109.00 6.37 0.81 32.54 7SK.1-201 misc RNA upper lobe of left lung (Tissue)
ENST00000365328.1 ENST00000365328.1_270_331_+ 270–331 126.00 7.36 0.93 70.79 7SK.1-201 misc RNA upper lobe of left lung (Tissue)
ENST00000365328.1 ENST00000365328.1_277_331_+ 277–331 249.00 14.54 1.84 87.68 7SK.1-201 misc RNA upper lobe of left lung (Tissue)
ENST00000365328.1 ENST00000365328.1_273_331_+ 273–331 93.00 5.43 0.69 72.66 7SK.1-201 misc RNA upper lobe of left lung (Tissue)
ENST00000365394.1 ENST00000365394.1_85_96_+ 85–96 632.00 55.29 4.68 100.0 RNA5SP77-201 rRNA pseudogene upper lobe of left lung (Tissue)
ENST00000365423.1 ENST00000365423.1_35_67_+ 35–67 1911.00 56.86 14.14 100.0 SNORD114-22-201 snoRNA upper lobe of left lung (Tissue)
ENST00000365423.1 ENST00000365423.1_4_67_+ 4–67 1320.00 39.27 9.76 97.71 SNORD114-22-201 snoRNA upper lobe of left lung (Tissue)
ENST00000365444.1 ENST00000365444.1_30_69_+ 30–69 441.00 3.63 3.26 100.0 SNORD6-201 snoRNA upper lobe of left lung (Tissue)
ENST00000365444.1 ENST00000365444.1_3_69_+ 3–69 9447.00 77.73 69.88 100.0 SNORD6-201 snoRNA upper lobe of left lung (Tissue)
ENST00000365530.1 ENST00000365530.1_3_29_+ 3–29 693.00 2.10 5.13 100.0 SNORD82-201 snoRNA upper lobe of left lung (Tissue)
ENST00000365530.1 ENST00000365530.1_4_67_+ 4–67 9464.00 28.65 70.01 98.47 SNORD82-201 snoRNA upper lobe of left lung (Tissue)
ENST00000365530.1 ENST00000365530.1_37_67_+ 37–67 734.00 2.22 5.43 100.0 SNORD82-201 snoRNA upper lobe of left lung (Tissue)
ENST00000365530.1 ENST00000365530.1_30_67_+ 30–67 4547.00 13.76 33.64 92.03 SNORD82-201 snoRNA upper lobe of left lung (Tissue)
ENST00000365530.1 ENST00000365530.1_3_48_+ 3–48 4461.76 13.50 33.01 37.08 SNORD82-201 snoRNA upper lobe of left lung (Tissue)
ENST00000365530.1 ENST00000365530.1_3_46_+ 3–46 7548.07 22.85 55.84 62.72 SNORD82-201 snoRNA upper lobe of left lung (Tissue)
ENST00000365530.1 ENST00000365530.1_3_39_+ 3–39 1670.00 5.05 12.35 100.0 SNORD82-201 snoRNA upper lobe of left lung (Tissue)
ENST00000365699.4 ENST00000365699.4_9_32_+ 9–32 264407.00 96.49 1955.92 97.86 MIR146B-201 miRNA upper lobe of left lung (Tissue)
ENST00000366365.3 ENST00000366365.3_327_364_+ 327–364 4538.00 91.77 33.57 100.0 SNHG20-201 lncRNA upper lobe of left lung (Tissue)
ENST00000369825.6 ENST00000369825.6_405_425_+ 405–425 8.00 2.14 0.06 100.0 ATP5MK-205 protein coding upper lobe of left lung (Tissue)
ENST00000369825.6 ENST00000369825.6_444_466_+ 444–466 74.00 19.84 0.55 100.0 ATP5MK-205 protein coding upper lobe of left lung (Tissue)
ENST00000377186.4 ENST00000377186.4_697_717_+ 697–717 11.00 13.10 0.08 100.0 LINC01556-201 lncRNA upper lobe of left lung (Tissue)
ENST00000378755.9 ENST00000378755.9_1289_1300_+ 1289–1300 200.00 48.19 1.48 100.0 ATAD3A-202 protein coding upper lobe of left lung (Tissue)
ENST00000381414.8 ENST00000381414.8_4377_4392_+ 4377–4392 22.00 11.70 0.16 37.29 TMC5-202 protein coding upper lobe of left lung (Tissue)
ENST00000382874.6 ENST00000382874.6_779_809_+ 779–809 75.00 78.95 0.55 100.0 ZMYM2-203 protein coding upper lobe of left lung (Tissue)