ENCFF643IED

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR737NPO
Description: Part of ENCODE experiment ENCSR737NPO. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 605.00 97.11 4.48 100.0 MIR15A-201 miRNA upper lobe of left lung (Tissue)
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 1.00 50.00 0.01 100.0 MIR376C-201 miRNA upper lobe of left lung (Tissue)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 714.00 54.05 5.28 100.0 SNHG21-206 retained intron upper lobe of left lung (Tissue)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 668976.00 48.82 4948.68 98.21 MIR486-1-201 miRNA upper lobe of left lung (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 22882.00 72.94 169.27 99.95 NOP56-219 retained intron upper lobe of left lung (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 572.00 1.82 4.23 100.0 NOP56-219 retained intron upper lobe of left lung (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 1551.00 4.94 11.47 100.0 NOP56-219 retained intron upper lobe of left lung (Tissue)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 2056.00 6.55 15.21 59.99 NOP56-219 retained intron upper lobe of left lung (Tissue)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 2614.46 26.75 19.34 43.66 RNA5-8SN2-201 rRNA upper lobe of left lung (Tissue)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 9.00 0.09 0.07 100.0 RNA5-8SN2-201 rRNA upper lobe of left lung (Tissue)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 1042.00 10.66 7.71 100.0 RNA5-8SN2-201 rRNA upper lobe of left lung (Tissue)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 11.00 0.11 0.08 100.0 RNA5-8SN2-201 rRNA upper lobe of left lung (Tissue)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 3237.27 33.13 23.95 54.06 RNA5-8SN2-201 rRNA upper lobe of left lung (Tissue)
ENST00000615835.1 ENST00000615835.1_56_79_+ 56–79 8.00 100.00 0.06 100.0 MIR7974-201 miRNA upper lobe of left lung (Tissue)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 230.00 0.62 1.70 100.0 U2.3-201 snRNA upper lobe of left lung (Tissue)
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 7577.00 20.39 56.05 44.21 U2.3-201 snRNA upper lobe of left lung (Tissue)
ENST00000617785.1 ENST00000617785.1_1_70_+ 1–70 2469.00 6.64 18.26 100.0 U2.3-201 snRNA upper lobe of left lung (Tissue)
ENST00000617785.1 ENST00000617785.1_170_188_+ 170–188 1852.00 4.98 13.70 100.0 U2.3-201 snRNA upper lobe of left lung (Tissue)
ENST00000617785.1 ENST00000617785.1_93_116_+ 93–116 1106.00 2.98 8.18 100.0 U2.3-201 snRNA upper lobe of left lung (Tissue)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 712.00 1.99 5.27 100.0 U2.6-201 snRNA upper lobe of left lung (Tissue)
ENST00000619323.3 ENST00000619323.3_499_516_+ 499–516 118.00 0.17 0.87 9.05 ENST00000619323 lncRNA upper lobe of left lung (Tissue)
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 64775.00 95.69 479.17 97.32 ENST00000619323 lncRNA upper lobe of left lung (Tissue)
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 652.00 30.31 4.82 100.0 SCARNA4-202 scaRNA upper lobe of left lung (Tissue)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 1274.00 78.11 9.42 100.0 ENST00000625572 miRNA upper lobe of left lung (Tissue)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 2559.00 71.34 18.93 100.0 ENST00000630615 snoRNA upper lobe of left lung (Tissue)