ENCFF643IED

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR737NPO
Description: Part of ENCODE experiment ENCSR737NPO. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000388006.1 ENST00000388006.1_7_28_+ 7–28 10.00 52.63 0.07 100.0 MIR196A1-201 miRNA upper lobe of left lung (Tissue)
ENST00000389680.2 ENST00000389680.2_316_354_+ 316–354 687.00 21.71 5.08 100.0 MT-RNR1-201 Mt rRNA upper lobe of left lung (Tissue)
ENST00000390180.1 ENST00000390180.1_64_86_+ 64–86 145.00 77.96 1.07 100.0 MIR454-201 miRNA upper lobe of left lung (Tissue)
ENST00000390204.1 ENST00000390204.1_51_72_+ 51–72 294.00 66.97 2.17 100.0 MIR501-201 miRNA upper lobe of left lung (Tissue)
ENST00000390225.1 ENST00000390225.1_30_51_+ 30–51 988.00 89.25 7.31 100.0 MIR769-201 miRNA upper lobe of left lung (Tissue)
ENST00000390689.3 ENST00000390689.3_37_51_+ 37–51 144.00 75.79 1.07 100.0 KRTAP19-1-201 protein coding upper lobe of left lung (Tissue)
ENST00000390708.1 ENST00000390708.1_11_33_+ 11–33 6.00 20.00 0.04 100.0 MIR708-201 miRNA upper lobe of left lung (Tissue)
ENST00000390725.1 ENST00000390725.1_44_66_+ 44–66 271.00 93.77 2.00 100.0 MIR509-3-201 miRNA upper lobe of left lung (Tissue)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 9.00 100.00 0.07 100.0 MIR301B-201 miRNA upper lobe of left lung (Tissue)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 313.00 44.15 2.32 75.6 RNU1-82P-201 snRNA upper lobe of left lung (Tissue)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 5960.00 33.25 44.09 67.61 SNORD66-201 snoRNA upper lobe of left lung (Tissue)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 544.00 3.03 4.02 100.0 SNORD66-201 snoRNA upper lobe of left lung (Tissue)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 1546.00 8.62 11.44 100.0 SNORD66-201 snoRNA upper lobe of left lung (Tissue)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 34.00 40.96 0.25 100.0 U3.17-201 snoRNA upper lobe of left lung (Tissue)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 5160.00 95.15 38.17 100.0 SNORD17-201 snoRNA upper lobe of left lung (Tissue)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 173.00 51.34 1.28 100.0 SNORD72-201 snoRNA upper lobe of left lung (Tissue)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 1369.00 77.65 10.13 100.0 SNORD70B-201 snoRNA upper lobe of left lung (Tissue)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 3150.00 63.46 23.30 93.33 RNY4P18-201 misc RNA upper lobe of left lung (Tissue)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 23590.00 60.46 174.50 100.0 SNORD69-201 snoRNA upper lobe of left lung (Tissue)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 7729.00 19.81 57.17 100.0 SNORD69-201 snoRNA upper lobe of left lung (Tissue)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 3524.00 9.03 26.07 100.0 SNORD69-201 snoRNA upper lobe of left lung (Tissue)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 962.00 2.47 7.12 100.0 SNORD69-201 snoRNA upper lobe of left lung (Tissue)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 81.00 0.33 0.60 100.0 B4GALNT2-202 protein coding upper lobe of left lung (Tissue)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 21001.00 84.77 155.35 91.23 B4GALNT2-202 protein coding upper lobe of left lung (Tissue)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 862.00 87.60 6.38 100.0 NDE1-202 protein coding upper lobe of left lung (Tissue)