ENCFF631JZF

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR882DFF
Description: Part of ENCODE experiment ENCSR882DFF. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 62.00 1.94 0.29 100.0 SNHG5-273 lncRNA sigmoid colon (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 63.00 1.98 0.29 100.0 SNHG5-273 lncRNA sigmoid colon (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 930.00 29.17 4.33 99.89 SNHG5-273 lncRNA sigmoid colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 67.00 2.10 0.31 100.0 SNHG5-273 lncRNA sigmoid colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 194.00 6.09 0.90 100.0 SNHG5-273 lncRNA sigmoid colon (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 25182.00 94.94 117.29 99.14 MEG8-251 lncRNA sigmoid colon (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 132.00 0.50 0.61 52.8 MEG8-251 lncRNA sigmoid colon (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 137.00 0.52 0.64 53.94 MEG8-251 lncRNA sigmoid colon (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 466.00 1.76 2.17 96.48 MEG8-251 lncRNA sigmoid colon (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 99.00 33.56 0.46 100.0 FMN2-209 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 23.00 0.26 0.11 100.0 LINC02739-203 lncRNA sigmoid colon (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 39.00 0.45 0.18 20.21 LINC02739-203 lncRNA sigmoid colon (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 105.00 1.21 0.49 100.0 LINC02739-203 lncRNA sigmoid colon (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 5105.00 58.72 23.78 100.0 LINC02739-203 lncRNA sigmoid colon (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 6.00 0.07 0.03 100.0 LINC02739-203 lncRNA sigmoid colon (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 154.00 1.77 0.72 79.79 LINC02739-203 lncRNA sigmoid colon (Tissue)
ENST00000685227.3 ENST00000685227.3_1036_1055_+ 1036–1055 2.00 100.00 0.01 100.0 MIR124-1HG-216 lncRNA sigmoid colon (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 21.00 17.80 0.10 100.0 SNHG10-212 lncRNA sigmoid colon (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 676.00 85.35 3.15 100.0 MIR222HG-206 lncRNA sigmoid colon (Tissue)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 1.00 0.13 0.00 100.0 MIR222HG-206 lncRNA sigmoid colon (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 57.00 7.20 0.27 85.07 MIR222HG-206 lncRNA sigmoid colon (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 69.00 56.10 0.32 100.0 RPSA-216 retained intron sigmoid colon (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 4192.00 85.46 19.52 97.9 MIR99AHG-370 lncRNA sigmoid colon (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 422.00 8.60 1.97 87.19 MIR99AHG-370 lncRNA sigmoid colon (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 4.00 100.00 0.02 100.0 HPS4-237 retained intron sigmoid colon (Tissue)