ENCFF631JZF

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR882DFF
Description: Part of ENCODE experiment ENCSR882DFF. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 196.00 75.97 0.91 100.0 RPS8-206 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 30.00 3.00 0.14 100.0 RPL13-207 retained intron sigmoid colon (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 296.00 29.63 1.38 100.0 RPL13-207 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 365.00 0.62 1.70 37.67 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 83.00 0.14 0.39 45.86 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 5791.00 9.82 26.97 85.12 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_376_+ 343–376 82.00 0.14 0.38 100.0 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 7779.00 13.20 36.23 75.53 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 2533.00 4.30 11.80 69.76 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 71.00 0.12 0.33 27.63 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 237.00 0.40 1.10 54.48 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 33885.00 57.48 157.82 98.33 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 721.00 1.22 3.36 53.05 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 32.00 0.05 0.15 100.0 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 572.00 0.97 2.66 88.68 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 46.00 29.87 0.21 100.0 RPL7A-206 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 28.00 18.18 0.13 100.0 RPL7A-206 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 3.00 1.95 0.01 100.0 RPL7A-206 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 88382.00 96.11 411.64 97.94 RPL21-209 retained intron sigmoid colon (Tissue)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 5.00 0.01 0.02 100.0 RPL21-209 retained intron sigmoid colon (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 540.00 0.59 2.52 100.0 RPL21-209 retained intron sigmoid colon (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 84.00 0.09 0.39 100.0 RPL21-209 retained intron sigmoid colon (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 2552.00 2.78 11.89 96.85 RPL21-209 retained intron sigmoid colon (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 2.00 25.00 0.01 100.0 GABRE-209 retained intron sigmoid colon (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 46.00 7.85 0.21 100.0 RPL13A-212 retained intron sigmoid colon (Tissue)