ENCFF631JZF

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR882DFF
Description: Part of ENCODE experiment ENCSR882DFF. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 38.00 7.97 0.18 100.0 SNORD71-201 snoRNA sigmoid colon (Tissue)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 13.00 2.73 0.06 100.0 SNORD71-201 snoRNA sigmoid colon (Tissue)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 697.00 88.01 3.25 93.94 MIR194-2HG-201 lncRNA sigmoid colon (Tissue)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 88.00 11.11 0.41 40.37 MIR194-2HG-201 lncRNA sigmoid colon (Tissue)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 1.00 33.33 0.00 100.0 RPS7P15-201 processed pseudogene sigmoid colon (Tissue)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 57.00 12.67 0.27 100.0 SNORD62B-201 snoRNA sigmoid colon (Tissue)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 59.00 13.11 0.27 100.0 SNORD62B-201 snoRNA sigmoid colon (Tissue)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 56.00 12.44 0.26 88.89 SNORD62B-201 snoRNA sigmoid colon (Tissue)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 1.00 100.00 0.00 100.0 MRPL32-203 nonsense mediated decay sigmoid colon (Tissue)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 3.00 33.33 0.01 100.0 ENST00000436739 lncRNA sigmoid colon (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 16.00 1.20 0.07 100.0 TMEM107-204 protein coding sigmoid colon (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 738.00 55.36 3.44 83.48 TMEM107-204 protein coding sigmoid colon (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 149.00 11.18 0.69 100.0 TMEM107-204 protein coding sigmoid colon (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 89.00 74.79 0.41 100.0 SNHG16-201 lncRNA sigmoid colon (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 5771.00 85.07 26.88 96.38 SNORD105B-201 snoRNA sigmoid colon (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 33.00 31.73 0.15 36.26 SNORD121B-201 snoRNA sigmoid colon (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 334.00 72.77 1.56 100.0 SNORD127-201 snoRNA sigmoid colon (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 2423.00 96.50 11.29 100.0 SNORD42B-201 snoRNA sigmoid colon (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 139.00 2.48 0.65 100.0 RNY4P25-201 misc RNA sigmoid colon (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 58.00 59.79 0.27 100.0 SNORD121A-201 snoRNA sigmoid colon (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 575.00 94.11 2.68 100.0 SNORD126-201 snoRNA sigmoid colon (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 254.00 54.16 1.18 100.0 SNHG12-201 retained intron sigmoid colon (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 514.00 94.49 2.39 100.0 SMC1A-204 retained intron sigmoid colon (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 13.00 4.19 0.06 100.0 DDX39B-219 retained intron sigmoid colon (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 103.00 33.23 0.48 100.0 DDX39B-219 retained intron sigmoid colon (Tissue)