ENCFF000JJT

Library Details

Organism: Homo Sapiens
Biosample: mammary epithelial cell (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVF
Description: Part of ENCODE experiment ENCSR000CVF. The libraries contained in this experiment come from mammary epithelial primary whole cells, HMEpC isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning..
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000527983.5 ENST00000527983.5_1314_1406_+ 1314–1406 199.00 50.64 66.29 70.07 HSPA8-211 retained intron mammary epithelial cell (Primary cell)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 828.00 90.99 275.82 100.0 RPS13-208 retained intron mammary epithelial cell (Primary cell)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 236.00 88.72 78.61 100.0 HSPA8-215 retained intron mammary epithelial cell (Primary cell)
ENST00000567229.5 ENST00000567229.5_479_567_+ 479–567 859.00 75.88 286.15 100.0 RPL4-214 retained intron mammary epithelial cell (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 85.00 54.49 28.31 100.0 ENST00000570843 lncRNA mammary epithelial cell (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 27.00 17.31 8.99 100.0 ENST00000570843 lncRNA mammary epithelial cell (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 0.95 0.81 0.32 47.58 C19orf48P-203 retained intron mammary epithelial cell (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 0.86 0.73 0.29 86.48 C19orf48P-203 retained intron mammary epithelial cell (Primary cell)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 80.00 67.80 26.65 100.0 C19orf48P-203 retained intron mammary epithelial cell (Primary cell)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 16.00 27.12 5.33 100.0 RPS11-206 retained intron mammary epithelial cell (Primary cell)
ENST00000612233.1 ENST00000612233.1_681_767_+ 681–767 381.00 63.50 126.92 100.0 NOP56-219 retained intron mammary epithelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 7.98 1.04 2.66 53.22 U2.3-201 snRNA mammary epithelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 3.00 0.39 1.00 75.0 U2.3-201 snRNA mammary epithelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 114.00 14.81 37.98 100.0 U2.3-201 snRNA mammary epithelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 12.00 1.56 4.00 54.55 U2.3-201 snRNA mammary epithelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 8.01 1.04 2.67 53.4 U2.3-201 snRNA mammary epithelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 17.38 2.26 5.79 75.59 U2.3-201 snRNA mammary epithelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 7.76 1.01 2.58 55.45 U2.3-201 snRNA mammary epithelial cell (Primary cell)
ENST00000640631.2 ENST00000640631.2_4119_4213_+ 4119–4213 7.00 3.68 2.33 100.0 SNHG14-224 lncRNA mammary epithelial cell (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1732_+ 1641–1732 360.00 0.51 119.92 100.0 GAS5-230 retained intron mammary epithelial cell (Primary cell)
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 19107.00 26.89 6364.82 97.29 GAS5-230 retained intron mammary epithelial cell (Primary cell)
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 22.00 0.03 7.33 100.0 GAS5-230 retained intron mammary epithelial cell (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 17697.00 24.90 5895.12 84.78 GAS5-230 retained intron mammary epithelial cell (Primary cell)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 1965.00 82.08 654.57 100.0 ENST00000651540 lncRNA mammary epithelial cell (Primary cell)
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 13832.00 42.00 4607.64 99.54 SNHG29-232 lncRNA mammary epithelial cell (Primary cell)