ENCFF000JJT

Library Details

Organism: Homo Sapiens
Biosample: mammary epithelial cell (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVF
Description: Part of ENCODE experiment ENCSR000CVF. The libraries contained in this experiment come from mammary epithelial primary whole cells, HMEpC isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning..
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 86.83 15.15 28.92 35.44 RNU5A-1-201 snRNA mammary epithelial cell (Primary cell)
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 43.00 7.50 14.32 46.74 RNU5A-1-201 snRNA mammary epithelial cell (Primary cell)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 45.47 7.93 15.15 34.44 RNU5A-1-201 snRNA mammary epithelial cell (Primary cell)
ENST00000363286.1 ENST00000363286.1_1_86_+ 1–86 1.00 0.68 0.33 100.0 RNU5B-1-201 snRNA mammary epithelial cell (Primary cell)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 18.00 29.51 6.00 100.0 7SK.1-201 misc RNA mammary epithelial cell (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 3.00 1.49 1.00 100.0 SNORD83A-201 snoRNA mammary epithelial cell (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 2.00 0.99 0.67 100.0 SNORD83A-201 snoRNA mammary epithelial cell (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 337.00 50.00 112.26 100.0 SNORD12B-201 snoRNA mammary epithelial cell (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 238.00 35.31 79.28 100.0 SNORD12B-201 snoRNA mammary epithelial cell (Primary cell)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 1882.00 87.33 626.92 100.0 SNHG3-202 retained intron mammary epithelial cell (Primary cell)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 723.00 62.44 240.84 100.0 SNORD124-201 snoRNA mammary epithelial cell (Primary cell)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 134.00 63.51 44.64 82.72 RPL3-212 retained intron mammary epithelial cell (Primary cell)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 48.00 1.42 15.99 100.0 RPL13A-212 retained intron mammary epithelial cell (Primary cell)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 1.00 0.03 0.33 100.0 RPL13A-212 retained intron mammary epithelial cell (Primary cell)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 2921.00 86.37 973.03 100.0 RPL13A-212 retained intron mammary epithelial cell (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 261.00 24.55 86.94 100.0 RPL7A-207 protein coding CDS not defined mammary epithelial cell (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 599.00 56.35 199.54 100.0 RPL7A-207 protein coding CDS not defined mammary epithelial cell (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 115.00 12.49 38.31 100.0 RABGGTB-213 protein coding CDS not defined mammary epithelial cell (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 398.00 43.21 132.58 100.0 RABGGTB-213 protein coding CDS not defined mammary epithelial cell (Primary cell)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 43.00 0.03 14.32 100.0 RPL5-205 retained intron mammary epithelial cell (Primary cell)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 127149.00 97.86 42355.16 99.78 RPL5-205 retained intron mammary epithelial cell (Primary cell)
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 393.00 68.83 130.91 100.0 RACK1-230 retained intron mammary epithelial cell (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 735.00 57.74 244.84 100.0 SNHG6-204 retained intron mammary epithelial cell (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 311.00 24.43 103.60 100.0 SNHG6-204 retained intron mammary epithelial cell (Primary cell)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 6.00 1.53 2.00 85.71 WDR74-204 protein coding mammary epithelial cell (Primary cell)