ENCFF625OBY

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR880LXP
Description: Part of ENCODE experiment ENCSR880LXP. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 1927.00 1.04 11.29 73.33 SNHG32-223 lncRNA sigmoid colon (Tissue)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 170795.00 92.49 1000.40 100.0 SNHG32-223 lncRNA sigmoid colon (Tissue)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 15877.00 91.37 93.00 98.84 SNHG32-227 lncRNA sigmoid colon (Tissue)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 690.00 3.97 4.04 100.0 SNHG32-227 lncRNA sigmoid colon (Tissue)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 23.00 0.13 0.13 100.0 SNHG32-227 lncRNA sigmoid colon (Tissue)
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 3439.00 86.36 20.14 100.0 B4GALT1-203 nonsense mediated decay sigmoid colon (Tissue)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 500.00 4.15 2.93 100.0 ENST00000722183 lncRNA sigmoid colon (Tissue)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 1141.00 9.47 6.68 82.15 ENST00000722183 lncRNA sigmoid colon (Tissue)
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 336.00 2.79 1.97 100.0 ENST00000722183 lncRNA sigmoid colon (Tissue)
ENST00000726427.1 ENST00000726427.1_819_841_+ 819–841 15.00 46.88 0.09 100.0 MIR34BHG-202 lncRNA sigmoid colon (Tissue)
ENST00000730292.1 ENST00000730292.1_241_262_+ 241–262 8680.00 85.77 50.84 88.46 THBS3-AS1-228 lncRNA sigmoid colon (Tissue)
ENST00000732834.1 ENST00000732834.1_2132_2152_+ 2132–2152 5.00 29.41 0.03 100.0 MIR200CHG-202 lncRNA sigmoid colon (Tissue)
ENST00000732834.1 ENST00000732834.1_1719_1741_+ 1719–1741 3.00 17.65 0.02 100.0 MIR200CHG-202 lncRNA sigmoid colon (Tissue)
ENST00000738116.1 ENST00000738116.1_111_138_+ 111–138 720.00 34.22 4.22 100.0 SNHG16-266 lncRNA sigmoid colon (Tissue)
ENST00000738116.1 ENST00000738116.1_64_97_+ 64–97 138.00 6.56 0.81 100.0 SNHG16-266 lncRNA sigmoid colon (Tissue)
ENST00000738116.1 ENST00000738116.1_88_138_+ 88–138 224.00 10.65 1.31 100.0 SNHG16-266 lncRNA sigmoid colon (Tissue)
ENST00000741826.1 ENST00000741826.1_184_205_+ 184–205 9.00 64.29 0.05 100.0 MEG8-261 lncRNA sigmoid colon (Tissue)
ENST00000743202.1 ENST00000743202.1_560_577_+ 560–577 114.00 36.31 0.67 100.0 NR2F2-AS1-327 lncRNA sigmoid colon (Tissue)
ENST00000747675.1 ENST00000747675.1_802_853_+ 802–853 377.00 1.55 2.21 50.33 ENST00000747675 lncRNA sigmoid colon (Tissue)
ENST00000747675.1 ENST00000747675.1_817_853_+ 817–853 6749.00 27.72 39.53 100.0 ENST00000747675 lncRNA sigmoid colon (Tissue)
ENST00000747675.1 ENST00000747675.1_800_853_+ 800–853 230.00 0.94 1.35 37.89 ENST00000747675 lncRNA sigmoid colon (Tissue)
ENST00000747675.1 ENST00000747675.1_804_853_+ 804–853 142.00 0.58 0.83 27.36 ENST00000747675 lncRNA sigmoid colon (Tissue)
ENST00000747675.1 ENST00000747675.1_812_853_+ 812–853 13442.00 55.20 78.73 100.0 ENST00000747675 lncRNA sigmoid colon (Tissue)
ENST00000748458.1 ENST00000748458.1_161_188_+ 161–188 21379.00 54.44 125.22 94.89 SNHG26-250 lncRNA sigmoid colon (Tissue)
ENST00000748458.1 ENST00000748458.1_161_230_+ 161–230 11854.00 30.19 69.43 99.97 SNHG26-250 lncRNA sigmoid colon (Tissue)